Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N21
(771 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 200 4e-51
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 197 3e-50
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 197 3e-50
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 197 3e-50
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 133 5e-31
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 119 1e-26
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 118 2e-26
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 117 3e-26
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 116 8e-26
sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase bet... 60 7e-09
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 200 bits (508), Expect = 4e-51
Identities = 113/199 (56%), Positives = 142/199 (71%), Gaps = 2/199 (1%)
Frame = +2
Query: 107 LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
++VK++ID R+ ALLGGG +RI+AQH +GKLTARERI LL D F+E D F+EH C+D
Sbjct: 35 VSVKERIDNKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFMESDMFVEHRCAD 94
Query: 287 FGMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
FGM A N+FPGDSVVTG G+I+GR ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VG
Sbjct: 95 FGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVG 154
Query: 461 APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
APVI G + + V AGYA+IF RNV A + L + GP GG ++ SP
Sbjct: 155 APVIGLNDSGGARIQEGV-ESLAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPA 211
Query: 641 INPILLLWVKDSSYLFITG 697
+ + VKD+SYLFITG
Sbjct: 212 LTDFTFM-VKDTSYLFITG 229
Score = 79.7 bits (195), Expect = 8e-15
Identities = 53/99 (53%), Positives = 60/99 (60%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
GLNDSGGA G +L F SGVIP I GPCAGG ++ PALT F
Sbjct: 159 GLNDSGGARIQEGVE-SLAGYADIFLRNVTASGVIP-QISLIMGPCAGGA-VYSPALTDF 215
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTHT 770
F +F+ GP+VVKSVTNEDVTQE+LGGAKTHT
Sbjct: 216 TFMVKDTSYLFIT-GPEVVKSVTNEDVTQEQLGGAKTHT 253
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 197 bits (501), Expect = 3e-50
Identities = 111/199 (55%), Positives = 140/199 (70%), Gaps = 2/199 (1%)
Frame = +2
Query: 107 LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
++V ++I+ R ALLGGG +RI++QH +GKLTARERI LL D F+E D F+EH C+D
Sbjct: 33 VSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFIESDMFVEHRCAD 92
Query: 287 FGMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
FGM A N+FPGDSVVTG G+I+GR ++FSQDFTVFGGSLS AHA+KICK+MDQAM VG
Sbjct: 93 FGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVG 152
Query: 461 APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
APVI G + + V AGYA+IF RNV A + L + GP GG ++ SP
Sbjct: 153 APVIGLNDSGGARIQEGV-ESLAGYADIFLRNVSASGVIPQISL-IMGPCAGGAVY-SPA 209
Query: 641 INPILLLWVKDSSYLFITG 697
+ + VKD+SYLFITG
Sbjct: 210 LTDFTFM-VKDTSYLFITG 227
Score = 80.9 bits (198), Expect = 4e-15
Identities = 54/99 (54%), Positives = 60/99 (60%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
GLNDSGGA G +L F SGVIP I GPCAGG ++ PALT F
Sbjct: 157 GLNDSGGARIQEGVE-SLAGYADIFLRNVSASGVIP-QISLIMGPCAGGA-VYSPALTDF 213
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTHT 770
F +F+ GPDVVKSVTNEDVTQEELGGA+THT
Sbjct: 214 TFMVKDTSYLFIT-GPDVVKSVTNEDVTQEELGGARTHT 251
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 197 bits (500), Expect = 3e-50
Identities = 112/198 (56%), Positives = 139/198 (70%), Gaps = 2/198 (1%)
Frame = +2
Query: 110 AVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSDF 289
+V ++I+ R ALLGGG +RI+AQH +GKLTARERI LL D FVE D F+EH C+DF
Sbjct: 34 SVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADF 93
Query: 290 GMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGA 463
GM A N+FPGDSVVTG G+I+GR ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VGA
Sbjct: 94 GMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGA 153
Query: 464 PVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPCI 643
PVI G + + V AGYA+IF RNV A + L + GP GG ++ SP +
Sbjct: 154 PVIGLNDSGGARIQEGV-ESLAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPAL 210
Query: 644 NPILLLWVKDSSYLFITG 697
+ VKD+SYLFITG
Sbjct: 211 TDFTFM-VKDTSYLFITG 227
Score = 82.4 bits (202), Expect = 1e-15
Identities = 55/99 (55%), Positives = 60/99 (60%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
GLNDSGGA G +L F SGVIP I GPCAGG ++ PALT F
Sbjct: 157 GLNDSGGARIQEGVE-SLAGYADIFLRNVTASGVIP-QISLIMGPCAGGA-VYSPALTDF 213
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTHT 770
F +F+ GPDVVKSVTNEDVTQEELGGAKTHT
Sbjct: 214 TFMVKDTSYLFIT-GPDVVKSVTNEDVTQEELGGAKTHT 251
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 197 bits (500), Expect = 3e-50
Identities = 111/199 (55%), Positives = 141/199 (70%), Gaps = 2/199 (1%)
Frame = +2
Query: 107 LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
++V ++I+ R+ ALLGGG +RI+AQH +GKLTARERI LL D F+E D F+EH C+D
Sbjct: 35 VSVNERIENKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFLESDMFVEHRCAD 94
Query: 287 FGM--EANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
FGM E N+FPGDSVVTG G+I+GR ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VG
Sbjct: 95 FGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVG 154
Query: 461 APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
APVI G + + V AGYA+IF RNV A + L + GP GG ++ SP
Sbjct: 155 APVIGLNDSGGARIQEGV-ESLAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPA 211
Query: 641 INPILLLWVKDSSYLFITG 697
+ + VKD+SYLFITG
Sbjct: 212 LTDFTFM-VKDTSYLFITG 229
Score = 77.8 bits (190), Expect = 3e-14
Identities = 52/99 (52%), Positives = 59/99 (59%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
GLNDSGGA G +L F SGVIP I GPCAGG ++ PALT F
Sbjct: 159 GLNDSGGARIQEGVE-SLAGYADIFLRNVTASGVIP-QISLIMGPCAGGA-VYSPALTDF 215
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTHT 770
F +F+ GP+ VKSVTNEDVTQE+LGGAKTHT
Sbjct: 216 TFMVKDTSYLFIT-GPEFVKSVTNEDVTQEQLGGAKTHT 253
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 133 bits (335), Expect = 5e-31
Identities = 87/200 (43%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = +2
Query: 101 HTLAVKKKIDETRN-KALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
HT A K RN +A+ G + + QH+KGK TARERI +L DE FVE D H
Sbjct: 19 HTTAGKLADLYRRNHEAVHAGSERAVAKQHAKGKRTARERIDMLLDEGSFVELDEHARHR 78
Query: 278 CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
++FGM+A+R GD VVTG+G + GR +FSQDFTVFGGSL +KI KVMD AM
Sbjct: 79 STNFGMDADRPYGDGVVTGWGTVDGRRVCVFSQDFTVFGGSLGEVFGEKIVKVMDLAMKT 138
Query: 458 GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
G P++ G + + V+ YAEIF+RN A + L + GP GG ++ SP
Sbjct: 139 GCPLVGINDSGGARIQEGVA-ALGLYAEIFKRNTHASGVIPQISL-IMGPCAGGAVY-SP 195
Query: 638 CINPILLLWVKDSSYLFITG 697
I ++ V +S++FITG
Sbjct: 196 AITDFTVM-VDQTSHMFITG 214
Score = 64.7 bits (156), Expect = 3e-10
Identities = 44/98 (44%), Positives = 57/98 (58%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
G+NDSGGA G L + F SGVIP I GPCAGG ++ PA+T F
Sbjct: 144 GINDSGGARIQEGVA-ALGLYAEIFKRNTHASGVIP-QISLIMGPCAGGA-VYSPAITDF 200
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
+ +F+ GPDV+K+VT EDV+ E+LGGA+TH
Sbjct: 201 TVMVDQTSHMFIT-GPDVIKTVTGEDVSFEDLGGARTH 237
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 119 bits (297), Expect = 1e-26
Identities = 80/200 (40%), Positives = 112/200 (56%), Gaps = 1/200 (0%)
Frame = +2
Query: 101 HTLAVK-KKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
HT A K ++ + +AL G E H+KGK TARERI+ L D++ FVE DA H
Sbjct: 23 HTTAGKLAELHKRTEEALHPVGAAAFEKVHAKGKFTARERIYALLDDDSFVELDALARHR 82
Query: 278 CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
++FG+ NR GD VVTGYG I GR IFSQD TVFGGSL + +KI KV + A+
Sbjct: 83 STNFGLGENRPVGDGVVTGYGTIDGRDVCIFSQDVTVFGGSLGEVYGEKIVKVQELAIKT 142
Query: 458 GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
G P+I G + + V Y+ IF+ N++A + L + G GG ++ SP
Sbjct: 143 GRPLIGINDGAGARIQEGVV-SLGLYSRIFRNNILASGVIPQISL-IMGAAAGGHVY-SP 199
Query: 638 CINPILLLWVKDSSYLFITG 697
+ +++ V +S +FITG
Sbjct: 200 ALTDFVVM-VDQTSQMFITG 218
Score = 59.3 bits (142), Expect = 1e-08
Identities = 43/98 (43%), Positives = 54/98 (55%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
G+ND GA G ++L + F SGVIP I G AGG ++ PALT F
Sbjct: 148 GINDGAGARIQEGV-VSLGLYSRIFRNNILASGVIP-QISLIMGAAAGGH-VYSPALTDF 204
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
+ +F+ GPDV+K+VT EDVT EELGGA TH
Sbjct: 205 VVMVDQTSQMFIT-GPDVIKTVTGEDVTMEELGGAHTH 241
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 118 bits (296), Expect = 2e-26
Identities = 80/200 (40%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Frame = +2
Query: 101 HTLAVK-KKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
HT A K ++ + R ++L G +E H+KGKLTARERI+ L DE+ FVE DA +H
Sbjct: 23 HTTAGKLAELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHR 82
Query: 278 CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
++F + R GD VVTGYG I GR IFSQD TVFGGSL + +KI KV + A+
Sbjct: 83 STNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT 142
Query: 458 GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
G P+I G + + V Y+ IF+ N++A + L + G GG ++ SP
Sbjct: 143 GRPLIGINDGAGARIQEGVV-SLGLYSRIFRNNILASGVIPQISL-IMGAAAGGHVY-SP 199
Query: 638 CINPILLLWVKDSSYLFITG 697
+ +++ V +S +FITG
Sbjct: 200 ALTDFVIM-VDQTSQMFITG 218
Score = 58.2 bits (139), Expect = 2e-08
Identities = 42/98 (42%), Positives = 54/98 (55%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRF 653
G+ND GA G ++L + F SGVIP I G AGG ++ PALT F
Sbjct: 148 GINDGAGARIQEGV-VSLGLYSRIFRNNILASGVIP-QISLIMGAAAGGH-VYSPALTDF 204
Query: 654 YFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
+ +F+ GPDV+K+VT E+VT EELGGA TH
Sbjct: 205 VIMVDQTSQMFIT-GPDVIKTVTGEEVTMEELGGAHTH 241
Score = 31.2 bits (69), Expect = 3.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 320 SVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGAPVI 472
++V G+G+I GRP I + T F G L + ++K + + P++
Sbjct: 336 NIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIV 386
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 117 bits (293), Expect = 3e-26
Identities = 75/187 (40%), Positives = 104/187 (55%)
Frame = +2
Query: 137 RNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSDFGMEANRFPG 316
R +A GGG +++ Q KGKLTARERI L D++ F+E FME S R G
Sbjct: 11 RKQAEEGGGREKLAQQRQKGKLTARERIIFLLDQDSFIELHPFME---SQVLTREQRMLG 67
Query: 317 DSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGAPVIWT**FWGC 496
D VVTGYG I GR ++F+QDFTV+GG+L HA+KIC +MD A AP+I G
Sbjct: 68 DGVVTGYGTIDGRSVYVFAQDFTVYGGALGETHARKICALMDLAAKNKAPIIGLNDSGGA 127
Query: 497 FVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPCINPILLLWVKDS 676
+ + V GY IF RNV+ + + + GP GG ++ SP + + + + +
Sbjct: 128 RIQEGVL-SLDGYGHIFYRNVLYSGVIPQISV-ILGPCAGGAVY-SPALTDFIFM-AEQT 183
Query: 677 SYLFITG 697
+FITG
Sbjct: 184 GRMFITG 190
Score = 59.7 bits (143), Expect = 9e-09
Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +3
Query: 474 GLNDSGGASYSRGCRITLQDM--LKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALT 647
GLNDSGGA G ++L + Y NV+ SGVIP I GPCAGG ++ PALT
Sbjct: 120 GLNDSGGARIQEGV-LSLDGYGHIFYRNVL--YSGVIP-QISVILGPCAGGA-VYSPALT 174
Query: 648 RFYFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
F F + +F+ GP V++ VT E V E LGGA H
Sbjct: 175 DFIFMAEQTGRMFIT-GPKVIEKVTGEQVDAESLGGAGIH 213
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 116 bits (290), Expect = 8e-26
Identities = 74/207 (35%), Positives = 114/207 (55%)
Frame = +2
Query: 77 AAPLQGSAHTLAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEW 256
A+ ++G LA ++++ E GGG +R+E QHS+GK TARER++ L D + F E
Sbjct: 10 ASTMEGRVEQLAEQRQVIEA------GGGERRVEKQHSQGKQTARERLNNLLDPHSFDEV 63
Query: 257 DAFMEHDCSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKV 436
AF +H + FGM+ P D VVTG G I GRP SQDFTV GGS + K+ +
Sbjct: 64 GAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVET 123
Query: 437 MDQAMLVGAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCG 616
M+QA+L G P ++ G + + + +GY ++F NV + + + GP G
Sbjct: 124 MEQALLTGTPFLFFYDSGGARIQEGID-SLSGYGKMFFANVKLSGVVPQIAI-IAGPCAG 181
Query: 617 GVLFISPCINPILLLWVKDSSYLFITG 697
G + SP + +++ K +++FITG
Sbjct: 182 GASY-SPALTDFIIMTKK--AHMFITG 205
Score = 64.3 bits (155), Expect = 3e-10
Identities = 44/95 (46%), Positives = 52/95 (54%)
Frame = +3
Query: 483 DSGGASYSRGCRITLQDMLKYFNVM*WLSGVIPANIFNYGGPCAGGCCLFHPALTRFYFY 662
DSGGA G +L K F LSGV+P I GPCAGG + PALT F
Sbjct: 139 DSGGARIQEGID-SLSGYGKMFFANVKLSGVVP-QIAIIAGPCAGGAS-YSPALTDFIIM 195
Query: 663 G*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
K + + GP V+KSVT EDVT +ELGGA+ H
Sbjct: 196 TKKAHMF--ITGPQVIKSVTGEDVTADELGGAEAH 228
>sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase beta chain, mitochondrial
precursor (PCCase beta subunit) (Propanoyl-CoA:carbon
dioxide ligase beta subunit)
Length = 578
Score = 60.1 bits (144), Expect = 7e-09
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Frame = +2
Query: 140 NKALLGGGIKRIEAQHSKGKLTARERIHLLCDE-NEFVEWDAFMEHDCSDFGMEANRFPG 316
++ L GGG K IE S+GKL ARERI+LL D+ + F+E A H+ +G E G
Sbjct: 60 SQVLKGGGQKAIERHTSRGKLLARERINLLLDKGSPFLELSALAGHEL--YGEEVVNSGG 117
Query: 317 DSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGAPVIW 475
+VTG G++ G + + D TV GGS KK + + A P I+
Sbjct: 118 --IVTGVGRVCGTECLVVANDATVKGGSYYPITVKKHLRAQEIAQENRLPCIY 168
Score = 37.4 bits (85), Expect = 0.045
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 LNDSGGASYSRGCRITLQDMLKY----FNVM*WLSGVIPANIFNYGGPCAGGCCLFHPAL 644
L DSGGA+ R + D L + +N + IP G AGG + PA+
Sbjct: 169 LVDSGGANLPRQADV-FPDKLHFGRIFYNQANMSAQGIPQIAVVMGSCTAGGA--YVPAM 225
Query: 645 TRFYFYG*KIRVIFLLLGPDVVKSVTNEDVTQEELGGAKTH 767
K IFL GP +VK+ T E+V+ E+LGGA H
Sbjct: 226 ADESIIVKKQGTIFLA-GPPLVKAATGEEVSAEDLGGADLH 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,450,336
Number of Sequences: 369166
Number of extensions: 2103839
Number of successful extensions: 4445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4411
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)