Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I22
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 413 e-115
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 412 e-115
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 407 e-113
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 407 e-113
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 277 2e-74
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 271 1e-72
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 270 3e-72
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 261 1e-69
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 258 1e-68
sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase bet... 192 9e-49
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 413 bits (1062), Expect = e-115
Identities = 197/247 (79%), Positives = 223/247 (90%)
Frame = +3
Query: 3 PPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVG 182
P DRLVP LDTIVPLEST AYNM+D+I+ VVDE EFFEIMP YAKNII+GF RM+GRTVG
Sbjct: 294 PSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVG 353
Query: 183 IIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGA 362
I+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGA
Sbjct: 354 IVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGA 413
Query: 363 KLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF 542
KLLYA+AEATVPK+T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF
Sbjct: 414 KLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIF 473
Query: 543 RGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWK 722
+G + + +AEY++KFANPFPAAVRGFVDDII+P TRA+IC DLD+L K++ PW+
Sbjct: 474 KGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWR 532
Query: 723 KHGNIPL 743
KH NIPL
Sbjct: 533 KHANIPL 539
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 412 bits (1058), Expect = e-115
Identities = 195/247 (78%), Positives = 223/247 (90%)
Frame = +3
Query: 3 PPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVG 182
P DRLVP LDT+VPLEST AY+M+D+IY +VDE +FFEIMP YAKNII+GF RM+GRTVG
Sbjct: 294 PSDRLVPELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVG 353
Query: 183 IIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGA 362
I+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGA
Sbjct: 354 IVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGA 413
Query: 363 KLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF 542
KLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF
Sbjct: 414 KLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIF 473
Query: 543 RGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWK 722
+G + + +AEY++KFANPFPAAVRGFVDDII+P TRA+IC DLD+L K++ PW+
Sbjct: 474 KGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKKVQRPWR 532
Query: 723 KHGNIPL 743
KH NIPL
Sbjct: 533 KHANIPL 539
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 407 bits (1046), Expect = e-113
Identities = 193/247 (78%), Positives = 221/247 (89%)
Frame = +3
Query: 3 PPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVG 182
P DRLVP LDT+VPLES+ AYNMLD+I+ V+DE EFFEIMP YAKNI+IGF RM+GRTVG
Sbjct: 296 PSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVG 355
Query: 183 IIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGA 362
I+GNQP VA+GCLDIN+SVKGARFVRFCDAF+IPL+TFVDVPGFLPGT QEYGGIIRHGA
Sbjct: 356 IVGNQPNVASGCLDINSSVKGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGA 415
Query: 363 KLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF 542
KLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF
Sbjct: 416 KLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIF 475
Query: 543 RGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWK 722
+G + +AEYV+KFANPFPAAVRGFVDDII+P TRA+IC DL++L K++ PW+
Sbjct: 476 KGHEDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWR 534
Query: 723 KHGNIPL 743
KH N+PL
Sbjct: 535 KHANVPL 541
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 407 bits (1045), Expect = e-113
Identities = 193/247 (78%), Positives = 221/247 (89%)
Frame = +3
Query: 3 PPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVG 182
P DRLVP LDT+VPLES+ AYNMLD+I+ V+DE EFFEIMP+YA NI++GF RM+GRTVG
Sbjct: 296 PSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYALNIVVGFARMNGRTVG 355
Query: 183 IIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGA 362
I+GNQP VA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGA
Sbjct: 356 IVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGA 415
Query: 363 KLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF 542
KLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF
Sbjct: 416 KLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIF 475
Query: 543 RGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWK 722
+G + +AEYV+KFANPFPAAVRGFVDDII+P TRA+IC DL++L K++ PW+
Sbjct: 476 KGHQDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKKVHRPWR 534
Query: 723 KHGNIPL 743
KH NIPL
Sbjct: 535 KHANIPL 541
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 277 bits (709), Expect = 2e-74
Identities = 140/250 (56%), Positives = 173/250 (69%), Gaps = 11/250 (4%)
Frame = +3
Query: 27 LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKV 206
LD +VP Y+M +VI +VDE EF E+ +A N++ GFGR+ G +VG++ NQP
Sbjct: 297 LDALVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQ 356
Query: 207 AAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAE 386
AG LDI+AS K ARFVRFCDAFNIP+LT VDVPGFLPGT Q++ IIR GAKLLYAYAE
Sbjct: 357 LAGTLDIDASEKAARFVRFCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAE 416
Query: 387 ATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQL 566
ATVP +T+ITRKAYGGAYDVM SKHL DIN AWPTA++AVMGA+GA I++R +E
Sbjct: 417 ATVPLVTVITRKAYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAA 476
Query: 567 TK-----------EAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLIN 713
+ + EY D NP+ AA RG+VD +I P TR + + L +L K+
Sbjct: 477 ERGEDVEALRARLQQEYEDTLCNPYVAAERGYVDSVIPPSHTRGHVARALRMLADKREAL 536
Query: 714 PWKKHGNIPL 743
P KKHGNIPL
Sbjct: 537 PAKKHGNIPL 546
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 271 bits (694), Expect = 1e-72
Identities = 143/250 (57%), Positives = 172/250 (68%), Gaps = 11/250 (4%)
Frame = +3
Query: 27 LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKV 206
LDT++P Y+M +VI ++D+ EF EI YA+NI++GFGR+ GR VGI+ NQP
Sbjct: 300 LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTH 358
Query: 207 AAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAE 386
AGCLDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLLYAY E
Sbjct: 359 FAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGE 418
Query: 387 ATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-- 560
ATVPKIT+ITRKAYGGAY VM SK + D+N AWPTA++AVMGA GAV ++R +E
Sbjct: 419 ATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAA 478
Query: 561 ---------QLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLIN 713
+L + EY D NP+ AA RG+VD +I P TR I L LL+ K
Sbjct: 479 ANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQL 538
Query: 714 PWKKHGNIPL 743
P KKHGN+PL
Sbjct: 539 PPKKHGNVPL 548
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 270 bits (691), Expect = 3e-72
Identities = 139/250 (55%), Positives = 170/250 (68%), Gaps = 11/250 (4%)
Frame = +3
Query: 27 LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKV 206
LDT++P Y+M +V+ ++DE EF E+ YA NI++G GR+ R VGI+ NQP
Sbjct: 300 LDTLIPDSPNQPYDMHEVVTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPVGIVANQPIQ 359
Query: 207 AAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAE 386
AGCLDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLL+AY E
Sbjct: 360 FAGCLDINASEKAARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGE 419
Query: 387 ATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-- 560
ATVPKIT+ITRKAYGGAY VM SK++ D+N AWPTA++AVMGA GAV ++R ++
Sbjct: 420 ATVPKITVITRKAYGGAYCVMGSKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQAA 479
Query: 561 ---------QLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLIN 713
+L + EY D NP+ AA RG+VD +I P TR I L LL+ K
Sbjct: 480 KNGANVDELRLQLQQEYEDTLVNPYIAAERGYVDAVIPPSHTRGYIATALHLLERKIAHL 539
Query: 714 PWKKHGNIPL 743
P KKHGNIPL
Sbjct: 540 PPKKHGNIPL 549
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 261 bits (668), Expect = 1e-69
Identities = 134/248 (54%), Positives = 171/248 (68%), Gaps = 7/248 (2%)
Frame = +3
Query: 21 PSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQP 200
P L+ +VP ++T Y++ VI + D FFEI P +AKNI+IGF R+ + +GI+ +QP
Sbjct: 259 PLLNRLVPADTTKPYDVRKVIRELADPQSFFEIQPFFAKNIVIGFARLGEKAIGIVASQP 318
Query: 201 KVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAY 380
K AG L I+A+ K ARF+RFCDAF+IPLLT DVPGFLPG QE+ GIIRHGAKLL+AY
Sbjct: 319 KHLAGSLTIDAADKAARFIRFCDAFDIPLLTVEDVPGFLPGIQQEHNGIIRHGAKLLFAY 378
Query: 381 AEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF----RG 548
AEATVPK+T+I RKAYGGAY M+SK + D+ +AWP AE+AVMG +GA I++ +
Sbjct: 379 AEATVPKVTLIIRKAYGGAYVAMNSKAIGADLVFAWPNAEIAVMGPEGAASILYEKEIKA 438
Query: 549 SGSEQLTKE---AEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPW 719
S Q TK AEY + A P+ AA G VDDII P +R ++ Q +L HK P
Sbjct: 439 SADPQKTKREKTAEYKKQNAGPYKAAACGMVDDIILPEESRGRLIQAFHMLTHKTEERPK 498
Query: 720 KKHGNIPL 743
KKHGNIPL
Sbjct: 499 KKHGNIPL 506
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 258 bits (660), Expect = 1e-68
Identities = 129/246 (52%), Positives = 167/246 (67%), Gaps = 7/246 (2%)
Frame = +3
Query: 27 LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKV 206
L IVP++ Y++ DVI +VD ++ E+ YA N++ F R++GR+VGI+ NQP V
Sbjct: 279 LRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSV 338
Query: 207 AAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAE 386
+GCLDINAS K A FV FCD+FNIPL+ VDVPGFLPG QEYGGIIRHGAK+LYAY+E
Sbjct: 339 MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSE 398
Query: 387 ATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFR------- 545
ATVPKIT++ RKAYGG+Y M ++ L D YAWP+AE+AVMGA+GA +IFR
Sbjct: 399 ATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAAD 458
Query: 546 GSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKK 725
+ + K EY + F P+ AA RG VDD+I+P TR KI L++ K+ P KK
Sbjct: 459 DPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKK 518
Query: 726 HGNIPL 743
+PL
Sbjct: 519 PWKLPL 524
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 473
Score = 192 bits (488), Expect = 9e-49
Identities = 102/249 (40%), Positives = 154/249 (61%), Gaps = 10/249 (4%)
Frame = +3
Query: 27 LDTIVPLESTAAYNMLDVIYGVVD-ESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPK 203
+ ++P S AY++ ++ ++D ++ F E +A ++++G GR+ GRTVG++ N P
Sbjct: 230 IHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRTVGVLANNPL 289
Query: 204 VAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYA 383
GCL+ ++ K ARFVR CDAF IPL+ VDVPG+LPG QE+GG++R GAKLL+A+
Sbjct: 290 RLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHAFG 349
Query: 384 EATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQ 563
E TVP++T++TRK YGGAY M+S+ L +AWP AEVAVMGAK AV I+ + +
Sbjct: 350 ECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGILHKKKLAAA 409
Query: 564 LTKEAEYV--------DKFANPFPAAVR-GFVDDIIEPRRTRAKICQDLDLLQHKQLINP 716
E E + ++ A +A+ G VD+ I+P TR+K+ + L ++
Sbjct: 410 PEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQAPARR---- 465
Query: 717 WKKHGNIPL 743
+H NIPL
Sbjct: 466 -GRHKNIPL 473
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,330,486
Number of Sequences: 369166
Number of extensions: 2252811
Number of successful extensions: 6130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6108
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)