Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_O18
(817 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 449 e-126
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 447 e-125
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 446 e-125
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 444 e-124
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 276 5e-74
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 272 7e-73
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 267 3e-71
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 262 7e-70
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 253 4e-67
sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (... 200 4e-51
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 449 bits (1155), Expect = e-126
Identities = 214/272 (78%), Positives = 245/272 (90%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVP 180
+THTT+SGVAH+AF+NDVDAL LREFF +LP SN+ +PIR HDP DRLVP LDT+VP
Sbjct: 248 RTHTTMSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVP 307
Query: 181 LESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLD 360
LEST AY+M+D+IY +VDE +FFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLD
Sbjct: 308 LESTRAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLD 367
Query: 361 INASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKI 540
IN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKI
Sbjct: 368 INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKI 427
Query: 541 TIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEY 720
T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + + +AEY
Sbjct: 428 TVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEY 486
Query: 721 VDKFANPFPAAVRGFVDDIIEPRRTRAKICQD 816
++KFANPFPAAVRGFVDDII+P TRA+IC D
Sbjct: 487 IEKFANPFPAAVRGFVDDIIQPSSTRARICCD 518
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 447 bits (1149), Expect = e-125
Identities = 214/272 (78%), Positives = 243/272 (89%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVP 180
KTHTT+SGVAH+AF+NDVDAL LREFF FLP S++ +PIR HDP DRLVP LDT+VP
Sbjct: 250 KTHTTVSGVAHRAFDNDVDALCNLREFFNFLPLSSQDPAPIRECHDPSDRLVPELDTVVP 309
Query: 181 LESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLD 360
LES+ AYNMLD+I+ V+DE EFFEIMP+YA NI++GF RM+GRTVGI+GNQP VA+GCLD
Sbjct: 310 LESSKAYNMLDIIHAVIDEREFFEIMPSYALNIVVGFARMNGRTVGIVGNQPNVASGCLD 369
Query: 361 INASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKI 540
IN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKI
Sbjct: 370 INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKI 429
Query: 541 TIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEY 720
T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + +AEY
Sbjct: 430 TVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVE-AAQAEY 488
Query: 721 VDKFANPFPAAVRGFVDDIIEPRRTRAKICQD 816
V+KFANPFPAAVRGFVDDII+P TRA+IC D
Sbjct: 489 VEKFANPFPAAVRGFVDDIIQPSSTRARICCD 520
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 446 bits (1148), Expect = e-125
Identities = 214/272 (78%), Positives = 244/272 (89%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVP 180
KTHTT+SGVAH+AFENDVDAL LR+FF +LP S++ + +R HDP DRLVP LDTIVP
Sbjct: 248 KTHTTMSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPASVRECHDPSDRLVPELDTIVP 307
Query: 181 LESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLD 360
LEST AYNM+D+I+ VVDE EFFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLD
Sbjct: 308 LESTKAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLD 367
Query: 361 INASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKI 540
IN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPK+
Sbjct: 368 INSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKV 427
Query: 541 TIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEY 720
T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + + +AEY
Sbjct: 428 TVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEY 486
Query: 721 VDKFANPFPAAVRGFVDDIIEPRRTRAKICQD 816
++KFANPFPAAVRGFVDDII+P TRA+IC D
Sbjct: 487 IEKFANPFPAAVRGFVDDIIQPSSTRARICCD 518
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 444 bits (1142), Expect = e-124
Identities = 214/272 (78%), Positives = 241/272 (88%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVP 180
KTHTT+SGVAH+AF+NDVDAL LREF FLP SN+ + IR HDP DRLVP LDT+VP
Sbjct: 250 KTHTTVSGVAHRAFDNDVDALCNLREFLNFLPLSNQDPASIRECHDPSDRLVPELDTVVP 309
Query: 181 LESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLD 360
LES+ AYNMLD+I+ V+DE EFFEIMP YAKNI+IGF RM+GRTVGI+GNQP VA+GCLD
Sbjct: 310 LESSKAYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLD 369
Query: 361 INASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKI 540
IN+SVKGARFVRFCDAF+IPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKI
Sbjct: 370 INSSVKGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKI 429
Query: 541 TIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEY 720
T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+AVMGAKGAV+IIF+G + +AEY
Sbjct: 430 TVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHEDVE-AAQAEY 488
Query: 721 VDKFANPFPAAVRGFVDDIIEPRRTRAKICQD 816
V+KFANPFPAAVRGFVDDII+P TRA+IC D
Sbjct: 489 VEKFANPFPAAVRGFVDDIIQPSSTRARICCD 520
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 276 bits (706), Expect = 5e-74
Identities = 144/290 (49%), Positives = 186/290 (64%), Gaps = 19/290 (6%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPS------ 162
+TH SG AH ++ DA+ ++E +FLP +N SP+ + + V
Sbjct: 235 RTHNERSGNAHYLATDEDDAISYVKELLSFLPSNNLSSSPVFPGAEVEEGSVADGVGDAD 294
Query: 163 --LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQP 336
LD +VP Y+M +VI +VDE EF E+ +A N++ GFGR+ G +VG++ NQP
Sbjct: 295 LELDALVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQP 354
Query: 337 KVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAY 516
AG LDI+AS K ARFVRFCDAFNIP+LT VDVPGFLPGT Q++ IIR GAKLLYAY
Sbjct: 355 MQLAGTLDIDASEKAARFVRFCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAY 414
Query: 517 AEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE 696
AEATVP +T+ITRKAYGGAYDVM SKHL DIN AWPTA++AVMGA+GA I++R +E
Sbjct: 415 AEATVPLVTVITRKAYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAE 474
Query: 697 QLTK-----------EAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQ 813
+ + EY D NP+ AA RG+VD +I P TR + +
Sbjct: 475 AAERGEDVEALRARLQQEYEDTLCNPYVAAERGYVDSVIPPSHTRGHVAR 524
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 272 bits (696), Expect = 7e-73
Identities = 147/286 (51%), Positives = 183/286 (63%), Gaps = 18/286 (6%)
Frame = +1
Query: 4 THTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSL------ 165
TH SG AH A + DA +RE ++LP +N +P + P + +L
Sbjct: 240 THMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLE 299
Query: 166 -DTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKV 342
DT++P Y+M +VI ++D+ EF EI YA+NI++GFGR+ GR VGI+ NQP
Sbjct: 300 LDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTH 358
Query: 343 AAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAE 522
AGCLDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLLYAY E
Sbjct: 359 FAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGE 418
Query: 523 ATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-- 696
ATVPKIT+ITRKAYGGAY VM SK + D+N AWPTA++AVMGA GAV ++R +E
Sbjct: 419 ATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAA 478
Query: 697 ---------QLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKI 807
+L + EY D NP+ AA RG+VD +I P TR I
Sbjct: 479 ANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYI 524
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 267 bits (682), Expect = 3e-71
Identities = 144/287 (50%), Positives = 182/287 (63%), Gaps = 19/287 (6%)
Frame = +1
Query: 4 THTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPP-----DRLVPS-- 162
TH SG AH + DA +R+ ++LP +N +P R+S P D L
Sbjct: 240 THMAKSGTAHYVASGEQDAFDWVRDVLSYLPSNNFTDAP-RYSKPVPHGSIEDNLTAKDL 298
Query: 163 -LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPK 339
LDT++P Y+M +V+ ++DE EF E+ YA NI++G GR+ R VGI+ NQP
Sbjct: 299 ELDTLIPDSPNQPYDMHEVVTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPVGIVANQPI 358
Query: 340 VAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYA 519
AGCLDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLL+AY
Sbjct: 359 QFAGCLDINASEKAARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYG 418
Query: 520 EATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE- 696
EATVPKIT+ITRKAYGGAY VM SK++ D+N AWPTA++AVMGA GAV ++R ++
Sbjct: 419 EATVPKITVITRKAYGGAYCVMGSKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQA 478
Query: 697 ----------QLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKI 807
+L + EY D NP+ AA RG+VD +I P TR I
Sbjct: 479 AKNGANVDELRLQLQQEYEDTLVNPYIAAERGYVDAVIPPSHTRGYI 525
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 262 bits (670), Expect = 7e-70
Identities = 137/278 (49%), Positives = 183/278 (65%), Gaps = 9/278 (3%)
Frame = +1
Query: 1 KTHTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPS--LDTI 174
+ H ISG H E+D A + ++ +FLPQ+N + + P + + P+ L I
Sbjct: 226 EAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVN---PNNDVSPNTELRDI 282
Query: 175 VPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGC 354
VP++ Y++ DVI +VD ++ E+ YA N++ F R++GR+VGI+ NQP V +GC
Sbjct: 283 VPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGC 342
Query: 355 LDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVP 534
LDINAS K A FV FCD+FNIPL+ VDVPGFLPG QEYGGIIRHGAK+LYAY+EATVP
Sbjct: 343 LDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVP 402
Query: 535 KITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFR-------GSGS 693
KIT++ RKAYGG+Y M ++ L D YAWP+AE+AVMGA+GA +IFR +
Sbjct: 403 KITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDA 462
Query: 694 EQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKI 807
+ K EY + F P+ AA RG VDD+I+P TR KI
Sbjct: 463 MRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKI 500
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 253 bits (646), Expect = 4e-67
Identities = 134/278 (48%), Positives = 181/278 (65%), Gaps = 9/278 (3%)
Frame = +1
Query: 7 HTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLV--PSLDTIVP 180
H +SG AH + + + L +R+ ++LP + R P P++ P L+ +VP
Sbjct: 213 HNAVSGNAHFSGHTEKEVLTGVRKLLSYLPLNGRTTEP------KPEKEASRPLLNRLVP 266
Query: 181 LESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLD 360
++T Y++ VI + D FFEI P +AKNI+IGF R+ + +GI+ +QPK AG L
Sbjct: 267 ADTTKPYDVRKVIRELADPQSFFEIQPFFAKNIVIGFARLGEKAIGIVASQPKHLAGSLT 326
Query: 361 INASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKI 540
I+A+ K ARF+RFCDAF+IPLLT DVPGFLPG QE+ GIIRHGAKLL+AYAEATVPK+
Sbjct: 327 IDAADKAARFIRFCDAFDIPLLTVEDVPGFLPGIQQEHNGIIRHGAKLLFAYAEATVPKV 386
Query: 541 TIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIF----RGSGSEQLTK 708
T+I RKAYGGAY M+SK + D+ +AWP AE+AVMG +GA I++ + S Q TK
Sbjct: 387 TLIIRKAYGGAYVAMNSKAIGADLVFAWPNAEIAVMGPEGAASILYEKEIKASADPQKTK 446
Query: 709 E---AEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQ 813
AEY + A P+ AA G VDDII P +R ++ Q
Sbjct: 447 REKTAEYKKQNAGPYKAAACGMVDDIILPEESRGRLIQ 484
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 476
Score = 200 bits (508), Expect = 4e-51
Identities = 111/269 (41%), Positives = 158/269 (58%), Gaps = 4/269 (1%)
Frame = +1
Query: 4 THTTISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPL 183
THT SGVAH A ++ DAL R + + + D L ++P
Sbjct: 184 THTKKSGVAHIAAHDEADALHRARRLVSMMCEQGEFDQRAAELGDS------DLRAMMPA 237
Query: 184 ESTAAYNMLDVIYGVVD----ESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAG 351
+ AY++ +++ ++D ES F E+ YA++I+ GFGRM GRTVG+I N P + G
Sbjct: 238 SAKRAYDVRPIVHEMLDNVEGESSFEELQGNYARSIVTGFGRMAGRTVGVIANNP-LRLG 296
Query: 352 CLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATV 531
CL+ ++ K ARFVR C+AF +PL+ VDVPG+LPG E+ G++R GAKLL+A+AEATV
Sbjct: 297 CLNSESAEKAARFVRLCNAFGVPLVVVVDVPGYLPGVSMEWEGVVRRGAKLLHAFAEATV 356
Query: 532 PKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKE 711
P++T++TRK YGGAY M+S+ L +AWP +EVAVMGAK AV I+ + + + E
Sbjct: 357 PRVTVVTRKIYGGAYIAMNSRALGATAVFAWPNSEVAVMGAKAAVGILHKRALAAAPDDE 416
Query: 712 AEYVDKFANPFPAAVRGFVDDIIEPRRTR 798
E + A+ G VD RR R
Sbjct: 417 REALHDRLAAEHEAIAGGVDRRCRNRRRR 445
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,463,458
Number of Sequences: 369166
Number of extensions: 2184778
Number of successful extensions: 6149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6112
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)