Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B23
(164 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 39 0.004
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 39 0.004
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 37 0.011
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 37 0.014
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 30 2.3
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 38.9 bits (89), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 3 KICQDLDLLQHKQLINPWKKHGNIPL 80
+IC DLD+L K++ PW+KH NIPL
Sbjct: 514 RICCDLDVLASKKVQRPWRKHANIPL 539
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 38.9 bits (89), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 3 KICQDLDLLQHKQLINPWKKHGNIPL 80
+IC DLD+L K++ PW+KH NIPL
Sbjct: 514 RICCDLDVLASKKVQRPWRKHANIPL 539
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 37.4 bits (85), Expect = 0.011
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 3 KICQDLDLLQHKQLINPWKKHGNIPL 80
+IC DL++L K++ PW+KH NIPL
Sbjct: 516 RICCDLEVLASKKVHRPWRKHANIPL 541
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 37.0 bits (84), Expect = 0.014
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 3 KICQDLDLLQHKQLINPWKKHGNIPL 80
+IC DL++L K++ PW+KH N+PL
Sbjct: 516 RICCDLEVLASKKVHRPWRKHANVPL 541
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 3 KICQDLDLLQHKQLINPWKKHGNIPL 80
++ Q +L HK P KKHGNIPL
Sbjct: 481 RLIQAFHMLTHKTEERPKKKHGNIPL 506
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,311,334
Number of Sequences: 369166
Number of extensions: 238741
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)