Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_M24
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 546 e-155
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 542 e-154
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 539 e-153
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 535 e-152
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 370 e-102
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 354 2e-97
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 350 3e-96
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 345 8e-95
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 334 2e-91
sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (... 266 6e-71
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 546 bits (1407), Expect = e-155
Identities = 266/312 (85%), Positives = 291/312 (93%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
LS AHA+KICK+MDQAM VGAPVIGLNDSGGARIQEGV SLAGYA+IF RNV ASGVIPQ
Sbjct: 133 LSGAHAQKICKIMDQAMTVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQ 192
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMGPCAGGAVYSPALTDFTFMVKD+SYLFITGPDVVKSVTNEDVTQEELGGA+THTT
Sbjct: 193 ISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTT 252
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTA 542
+SGVAH+AF+NDVDAL LREFF +LP SN+ +PIR HDP DRLVP LDT+VPLEST
Sbjct: 253 MSGVAHRAFDNDVDALCNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTR 312
Query: 543 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 722
AY+M+D+IY +VDE +FFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SV
Sbjct: 313 AYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSV 372
Query: 723 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 902
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 373 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 432
Query: 903 KAYGGAYDVMSS 938
KAYGGAYDVMSS
Sbjct: 433 KAYGGAYDVMSS 444
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 542 bits (1396), Expect = e-154
Identities = 265/312 (84%), Positives = 290/312 (92%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
LS AHA+KICK+MDQA+ VGAPVIGLNDSGGARIQEGV SLAGYA+IF RNV ASGVIPQ
Sbjct: 133 LSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQ 192
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMGPCAGGAVYSPALTDFTFMVKD+SYLFITGPDVVKSVTNEDVTQEELGGAKTHTT
Sbjct: 193 ISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 252
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTA 542
+SGVAH+AFENDVDAL LR+FF +LP S++ + +R HDP DRLVP LDTIVPLEST
Sbjct: 253 MSGVAHRAFENDVDALCNLRDFFNYLPLSSQDPASVRECHDPSDRLVPELDTIVPLESTK 312
Query: 543 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 722
AYNM+D+I+ VVDE EFFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SV
Sbjct: 313 AYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSV 372
Query: 723 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 902
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPK+T+ITR
Sbjct: 373 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITR 432
Query: 903 KAYGGAYDVMSS 938
KAYGGAYDVMSS
Sbjct: 433 KAYGGAYDVMSS 444
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 539 bits (1389), Expect = e-153
Identities = 262/312 (83%), Positives = 290/312 (92%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
LS AHA+KICK+MDQA+ VGAPVIGLNDSGGARIQEGV SLAGYA+IF RNV ASGVIPQ
Sbjct: 135 LSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQ 194
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMGPCAGGAVYSPALTDFTFMVKD+SYLFITGP+VVKSVTNEDVTQE+LGGAKTHTT
Sbjct: 195 ISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTT 254
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTA 542
+SGVAH+AF+NDVDAL LREFF FLP S++ +PIR HDP DRLVP LDT+VPLES+
Sbjct: 255 VSGVAHRAFDNDVDALCNLREFFNFLPLSSQDPAPIRECHDPSDRLVPELDTVVPLESSK 314
Query: 543 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 722
AYNMLD+I+ V+DE EFFEIMP+YA NI++GF RM+GRTVGI+GNQP VA+GCLDIN+SV
Sbjct: 315 AYNMLDIIHAVIDEREFFEIMPSYALNIVVGFARMNGRTVGIVGNQPNVASGCLDINSSV 374
Query: 723 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 902
KGARFVRFCDAFNIPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 375 KGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 434
Query: 903 KAYGGAYDVMSS 938
KAYGGAYDVMSS
Sbjct: 435 KAYGGAYDVMSS 446
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 535 bits (1377), Expect = e-152
Identities = 261/312 (83%), Positives = 287/312 (91%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
LS AHA+KICK+MDQA+ VGAPVIGLNDSGGARIQEGV SLAGYA+IF RNV ASGVIPQ
Sbjct: 135 LSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQ 194
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMGPCAGGAVYSPALTDFTFMVKD+SYLFITGP+ VKSVTNEDVTQE+LGGAKTHTT
Sbjct: 195 ISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPEFVKSVTNEDVTQEQLGGAKTHTT 254
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTA 542
+SGVAH+AF+NDVDAL LREF FLP SN+ + IR HDP DRLVP LDT+VPLES+
Sbjct: 255 VSGVAHRAFDNDVDALCNLREFLNFLPLSNQDPASIRECHDPSDRLVPELDTVVPLESSK 314
Query: 543 AYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASV 722
AYNMLD+I+ V+DE EFFEIMP YAKNI+IGF RM+GRTVGI+GNQP VA+GCLDIN+SV
Sbjct: 315 AYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLDINSSV 374
Query: 723 KGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITR 902
KGARFVRFCDAF+IPL+TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITR
Sbjct: 375 KGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITR 434
Query: 903 KAYGGAYDVMSS 938
KAYGGAYDVMSS
Sbjct: 435 KAYGGAYDVMSS 446
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 370 bits (951), Expect = e-102
Identities = 190/320 (59%), Positives = 233/320 (72%), Gaps = 8/320 (2%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
L +KI KVMD AM G P++G+NDSGGARIQEGVA+L YAEIF+RN ASGVIPQ
Sbjct: 120 LGEVFGEKIVKVMDLAMKTGCPLVGINDSGGARIQEGVAALGLYAEIFKRNTHASGVIPQ 179
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMGPCAGGAVYSPA+TDFT MV +S++FITGPDV+K+VT EDV+ E+LGGA+TH
Sbjct: 180 ISLIMGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVSFEDLGGARTHNE 239
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVP--------SLDT 518
SG AH ++ DA+ ++E +FLP +N SP+ + + V LD
Sbjct: 240 RSGNAHYLATDEDDAISYVKELLSFLPSNNLSSSPVFPGAEVEEGSVADGVGDADLELDA 299
Query: 519 IVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAG 698
+VP Y+M +VI +VDE EF E+ +A N++ GFGR+ G +VG++ NQP AG
Sbjct: 300 LVPDSPNQPYDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQLAG 359
Query: 699 CLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATV 878
LDI+AS K ARFVRFCDAFNIP+LT VDVPGFLPGT Q++ IIR GAKLLYAYAEATV
Sbjct: 360 TLDIDASEKAARFVRFCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAEATV 419
Query: 879 PKITIITRKAYGGAYDVMSS 938
P +T+ITRKAYGGAYDVM S
Sbjct: 420 PLVTVITRKAYGGAYDVMGS 439
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 354 bits (908), Expect = 2e-97
Identities = 185/319 (57%), Positives = 224/319 (70%), Gaps = 7/319 (2%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
L + +KI KV + A+ G P+IG+ND GARIQEGV SL Y+ IF+ N++ASGVIPQ
Sbjct: 124 LGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQ 183
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMG AGG VYSPALTDF MV +S +FITGPDV+K+VT E+VT EELGGA TH
Sbjct: 184 ISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEVTMEELGGAHTHMA 243
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSL-------DTI 521
SG AH A + DA +RE ++LP +N +P + P + +L DT+
Sbjct: 244 KSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTL 303
Query: 522 VPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGC 701
+P Y+M +VI ++D+ EF EI YA+NI++GFGR+ GR VGI+ NQP AGC
Sbjct: 304 IPDSPNQPYDMHEVITRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGC 362
Query: 702 LDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVP 881
LDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLLYAY EATVP
Sbjct: 363 LDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVP 422
Query: 882 KITIITRKAYGGAYDVMSS 938
KIT+ITRKAYGGAY VM S
Sbjct: 423 KITVITRKAYGGAYCVMGS 441
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 350 bits (899), Expect = 3e-96
Identities = 184/320 (57%), Positives = 222/320 (69%), Gaps = 8/320 (2%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
L + +KI KV + A+ G P+IG+ND GARIQEGV SL Y+ IF+ N++ASGVIPQ
Sbjct: 124 LGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQ 183
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
ISLIMG AGG VYSPALTDF MV +S +FITGPDV+K+VT EDVT EELGGA TH
Sbjct: 184 ISLIMGAAAGGHVYSPALTDFVVMVDQTSQMFITGPDVIKTVTGEDVTMEELGGAHTHMA 243
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPP-----DRLVPS---LDT 518
SG AH + DA +R+ ++LP +N +P R+S P D L LDT
Sbjct: 244 KSGTAHYVASGEQDAFDWVRDVLSYLPSNNFTDAP-RYSKPVPHGSIEDNLTAKDLELDT 302
Query: 519 IVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAG 698
++P Y+M +V+ ++DE EF E+ YA NI++G GR+ R VGI+ NQP AG
Sbjct: 303 LIPDSPNQPYDMHEVVTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPVGIVANQPIQFAG 362
Query: 699 CLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATV 878
CLDINAS K ARFVR CD FNIP++ VDVPGFLPGT QEY GIIR GAKLL+AY EATV
Sbjct: 363 CLDINASEKAARFVRVCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEATV 422
Query: 879 PKITIITRKAYGGAYDVMSS 938
PKIT+ITRKAYGGAY VM S
Sbjct: 423 PKITVITRKAYGGAYCVMGS 442
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 345 bits (886), Expect = 8e-95
Identities = 177/314 (56%), Positives = 222/314 (70%), Gaps = 2/314 (0%)
Frame = +3
Query: 3 LSMAHAKKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQ 182
L HA+KIC +MD A AP+IGLNDSGGARIQEGV SL GY IF RNV+ SGVIPQ
Sbjct: 96 LGETHARKICALMDLAAKNKAPIIGLNDSGGARIQEGVLSLDGYGHIFYRNVLYSGVIPQ 155
Query: 183 ISLIMGPCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTT 362
IS+I+GPCAGGAVYSPALTDF FM + + +FITGP V++ VT E V E LGGA H
Sbjct: 156 ISVILGPCAGGAVYSPALTDFIFMAEQTGRMFITGPKVIEKVTGEQVDAESLGGAGIHNA 215
Query: 363 ISGVAHKAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLV--PSLDTIVPLES 536
+SG AH + + + L +R+ ++LP + R P P++ P L+ +VP ++
Sbjct: 216 VSGNAHFSGHTEKEVLTGVRKLLSYLPLNGRTTEP------KPEKEASRPLLNRLVPADT 269
Query: 537 TAAYNMLDVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINA 716
T Y++ VI + D FFEI P +AKNI+IGF R+ + +GI+ +QPK AG L I+A
Sbjct: 270 TKPYDVRKVIRELADPQSFFEIQPFFAKNIVIGFARLGEKAIGIVASQPKHLAGSLTIDA 329
Query: 717 SVKGARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITII 896
+ K ARF+RFCDAF+IPLLT DVPGFLPG QE+ GIIRHGAKLL+AYAEATVPK+T+I
Sbjct: 330 ADKAARFIRFCDAFDIPLLTVEDVPGFLPGIQQEHNGIIRHGAKLLFAYAEATVPKVTLI 389
Query: 897 TRKAYGGAYDVMSS 938
RKAYGGAY M+S
Sbjct: 390 IRKAYGGAYVAMNS 403
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 334 bits (856), Expect = 2e-91
Identities = 168/305 (55%), Positives = 219/305 (71%), Gaps = 2/305 (0%)
Frame = +3
Query: 24 KICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQISLIMGP 203
K+ + M+QA+L G P + DSGGARIQEG+ SL+GY ++F NV SGV+PQI++I GP
Sbjct: 119 KVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGP 178
Query: 204 CAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHK 383
CAGGA YSPALTDF M K +++FITGP V+KSVT EDVT +ELGGA+ H ISG H
Sbjct: 179 CAGGASYSPALTDFIIMTK-KAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHF 237
Query: 384 AFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPS--LDTIVPLESTAAYNML 557
E+D A + ++ +FLPQ+N + + P + + P+ L IVP++ Y++
Sbjct: 238 VAEDDDAAELIAKKLLSFLPQNNTEEASFVN---PNNDVSPNTELRDIVPIDGKKGYDVR 294
Query: 558 DVIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARF 737
DVI +VD ++ E+ YA N++ F R++GR+VGI+ NQP V +GCLDINAS K A F
Sbjct: 295 DVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEF 354
Query: 738 VRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGG 917
V FCD+FNIPL+ VDVPGFLPG QEYGGIIRHGAK+LYAY+EATVPKIT++ RKAYGG
Sbjct: 355 VNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGG 414
Query: 918 AYDVM 932
+Y M
Sbjct: 415 SYLAM 419
>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 476
Score = 266 bits (680), Expect = 6e-71
Identities = 140/310 (45%), Positives = 196/310 (63%), Gaps = 4/310 (1%)
Frame = +3
Query: 21 KKICKVMDQAMLVGAPVIGLNDSGGARIQEGVASLAGYAEIFQRNVMASGVIPQISLIMG 200
K + K +D A+ +P++GL SGGAR+ EGV +L +F+ V ASG+IPQIS+++G
Sbjct: 75 KHLVKAIDTAIEEESPIVGLWHSGGARLAEGVEALHAVGLVFEAMVRASGLIPQISVVLG 134
Query: 201 PCAGGAVYSPALTDFTFMVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAH 380
AGGA Y PALTD M + +F+TGPDVV+SVT E V LGG THT SGVAH
Sbjct: 135 FAAGGAAYGPALTDVVIMAPEGR-VFVTGPDVVRSVTGEQVDMVSLGGPDTHTKKSGVAH 193
Query: 381 KAFENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLD 560
A ++ DAL R + + + D L ++P + AY++
Sbjct: 194 IAAHDEADALHRARRLVSMMCEQGEFDQRAAELGDS------DLRAMMPASAKRAYDVRP 247
Query: 561 VIYGVVD----ESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKG 728
+++ ++D ES F E+ YA++I+ GFGRM GRTVG+I N P + GCL+ ++ K
Sbjct: 248 IVHEMLDNVEGESSFEELQGNYARSIVTGFGRMAGRTVGVIANNP-LRLGCLNSESAEKA 306
Query: 729 ARFVRFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKA 908
ARFVR C+AF +PL+ VDVPG+LPG E+ G++R GAKLL+A+AEATVP++T++TRK
Sbjct: 307 ARFVRLCNAFGVPLVVVVDVPGYLPGVSMEWEGVVRRGAKLLHAFAEATVPRVTVVTRKI 366
Query: 909 YGGAYDVMSS 938
YGGAY M+S
Sbjct: 367 YGGAYIAMNS 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,365,591
Number of Sequences: 369166
Number of extensions: 2598593
Number of successful extensions: 6448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6412
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)