Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D24
(915 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 507 e-143
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 504 e-142
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 501 e-141
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 496 e-140
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 318 1e-86
sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase bet... 315 9e-86
sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase bet... 313 4e-85
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 305 2e-82
sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase bet... 286 7e-77
sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase bet... 230 5e-60
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 507 bits (1306), Expect = e-143
Identities = 244/303 (80%), Positives = 276/303 (91%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
SYLFITGPDVVKSVTNEDVTQEELGGA+THTT+SGVAH+AF+NDVDAL LREFF +LP
Sbjct: 221 SYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFFNYLPL 280
Query: 181 SNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNI 360
SN+ +PIR HDP DRLVP LDT+VPLEST AY+M+D+IY +VDE +FFEIMP YAKNI
Sbjct: 281 SNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDIIYSIVDERDFFEIMPNYAKNI 340
Query: 361 IIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPG 540
I+GF RM+GRTVGI+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPG
Sbjct: 341 IVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPG 400
Query: 541 TVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEV 720
T QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+
Sbjct: 401 TAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEI 460
Query: 721 AVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDL 900
AVMGAKGAV+IIF+G + + +AEY++KFANPFPAAVRGFVDDII+P TRA+IC DL
Sbjct: 461 AVMGAKGAVEIIFKGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDL 519
Query: 901 DLL 909
D+L
Sbjct: 520 DVL 522
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 539
Score = 504 bits (1299), Expect = e-142
Identities = 244/303 (80%), Positives = 275/303 (90%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
SYLFITGPDVVKSVTNEDVTQEELGGAKTHTT+SGVAH+AFENDVDAL LR+FF +LP
Sbjct: 221 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFFNYLPL 280
Query: 181 SNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNI 360
S++ + +R HDP DRLVP LDTIVPLEST AYNM+D+I+ VVDE EFFEIMP YAKNI
Sbjct: 281 SSQDPASVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREFFEIMPNYAKNI 340
Query: 361 IIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPG 540
I+GF RM+GRTVGI+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPG
Sbjct: 341 IVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPG 400
Query: 541 TVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEV 720
T QEYGGIIRHGAKLLYA+AEATVPK+T+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+
Sbjct: 401 TAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGDTNYAWPTAEI 460
Query: 721 AVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDL 900
AVMGAKGAV+IIF+G + + +AEY++KFANPFPAAVRGFVDDII+P TRA+IC DL
Sbjct: 461 AVMGAKGAVEIIFKGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQPSSTRARICCDL 519
Query: 901 DLL 909
D+L
Sbjct: 520 DVL 522
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 501 bits (1289), Expect = e-141
Identities = 241/303 (79%), Positives = 274/303 (90%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
SYLFITGP+VVKSVTNEDVTQE+LGGAKTHTT+SGVAH+AF+NDVDAL LREFF FLP
Sbjct: 223 SYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREFFNFLPL 282
Query: 181 SNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNI 360
S++ +PIR HDP DRLVP LDT+VPLES+ AYNMLD+I+ V+DE EFFEIMP+YA NI
Sbjct: 283 SSQDPAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPSYALNI 342
Query: 361 IIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPG 540
++GF RM+GRTVGI+GNQP VA+GCLDIN+SVKGARFVRFCDAFNIPL+TFVDVPGFLPG
Sbjct: 343 VVGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPG 402
Query: 541 TVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEV 720
T QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+
Sbjct: 403 TAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEI 462
Query: 721 AVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDL 900
AVMGAKGAV+IIF+G + +AEYV+KFANPFPAAVRGFVDDII+P TRA+IC DL
Sbjct: 463 AVMGAKGAVEIIFKGHQDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDL 521
Query: 901 DLL 909
++L
Sbjct: 522 EVL 524
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
subunit)
Length = 541
Score = 496 bits (1277), Expect = e-140
Identities = 240/303 (79%), Positives = 271/303 (89%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
SYLFITGP+ VKSVTNEDVTQE+LGGAKTHTT+SGVAH+AF+NDVDAL LREF FLP
Sbjct: 223 SYLFITGPEFVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREFLNFLPL 282
Query: 181 SNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNI 360
SN+ + IR HDP DRLVP LDT+VPLES+ AYNMLD+I+ V+DE EFFEIMP YAKNI
Sbjct: 283 SNQDPASIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDEREFFEIMPNYAKNI 342
Query: 361 IIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPG 540
+IGF RM+GRTVGI+GNQP VA+GCLDIN+SVKGARFVRFCDAF+IPL+TFVDVPGFLPG
Sbjct: 343 VIGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFSIPLITFVDVPGFLPG 402
Query: 541 TVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEV 720
T QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL GD NYAWPTAE+
Sbjct: 403 TAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGDTNYAWPTAEI 462
Query: 721 AVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTRAKICQDL 900
AVMGAKGAV+IIF+G + +AEYV+KFANPFPAAVRGFVDDII+P TRA+IC DL
Sbjct: 463 AVMGAKGAVEIIFKGHEDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQPSSTRARICCDL 521
Query: 901 DLL 909
++L
Sbjct: 522 EVL 524
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 318 bits (816), Expect = 1e-86
Identities = 165/322 (51%), Positives = 214/322 (66%), Gaps = 19/322 (5%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
S++FITGPDV+K+VT EDV+ E+LGGA+TH SG AH ++ DA+ ++E +FLP
Sbjct: 208 SHMFITGPDVIKTVTGEDVSFEDLGGARTHNERSGNAHYLATDEDDAISYVKELLSFLPS 267
Query: 181 SNRLHSPIRHSHDPPDRLVPS--------LDTIVPLESTAAYNMLDVIYGVVDESEFFEI 336
+N SP+ + + V LD +VP Y+M +VI +VDE EF E+
Sbjct: 268 NNLSSSPVFPGAEVEEGSVADGVGDADLELDALVPDSPNQPYDMREVITRLVDEGEFLEV 327
Query: 337 MPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFV 516
+A N++ GFGR+ G +VG++ NQP AG LDI+AS K ARFVRFCDAFNIP+LT V
Sbjct: 328 SALFAPNMLCGFGRIEGASVGVVANQPMQLAGTLDIDASEKAARFVRFCDAFNIPVLTLV 387
Query: 517 DVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDIN 696
DVPGFLPGT Q++ IIR GAKLLYAYAEATVP +T+ITRKAYGGAYDVM SKHL DIN
Sbjct: 388 DVPGFLPGTGQDWNAIIRRGAKLLYAYAEATVPLVTVITRKAYGGAYDVMGSKHLGADIN 447
Query: 697 YAWPTAEVAVMGAKGAVQIIFRGSGSEQLTK-----------EAEYVDKFANPFPAAVRG 843
AWPTA++AVMGA+GA I++R +E + + EY D NP+ AA RG
Sbjct: 448 LAWPTAQIAVMGAQGAANILYRRQLAEAAERGEDVEALRARLQQEYEDTLCNPYVAAERG 507
Query: 844 FVDDIIEPRRTRAKICQDLDLL 909
+VD +I P TR + + L +L
Sbjct: 508 YVDSVIPPSHTRGHVARALRML 529
>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 548
Score = 315 bits (808), Expect = 9e-86
Identities = 170/322 (52%), Positives = 211/322 (65%), Gaps = 18/322 (5%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
S +FITGPDV+K+VT E+VT EELGGA TH SG AH A + DA +RE ++LP
Sbjct: 212 SQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPP 271
Query: 181 SNRLHSPIRHSHDPPDRLVPSL-------DTIVPLESTAAYNMLDVIYGVVDESEFFEIM 339
+N +P + P + +L DT++P Y+M +VI ++D+ EF EI
Sbjct: 272 NNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDD-EFLEIQ 330
Query: 340 PTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVD 519
YA+NI++GFGR+ GR VGI+ NQP AGCLDINAS K ARFVR CD FNIP++ VD
Sbjct: 331 AGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVD 390
Query: 520 VPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINY 699
VPGFLPGT QEY GIIR GAKLLYAY EATVPKIT+ITRKAYGGAY VM SK + D+N
Sbjct: 391 VPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNL 450
Query: 700 AWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLTKEAEYVDKFANPFPAAVRGF 846
AWPTA++AVMGA GAV ++R +E +L + EY D NP+ AA RG+
Sbjct: 451 AWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGY 510
Query: 847 VDDIIEPRRTRAKICQDLDLLQ 912
VD +I P TR I L LL+
Sbjct: 511 VDAVIPPSHTRGYIGTALRLLE 532
>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 549
Score = 313 bits (802), Expect = 4e-85
Identities = 168/323 (52%), Positives = 210/323 (65%), Gaps = 19/323 (5%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
S +FITGPDV+K+VT EDVT EELGGA TH SG AH + DA +R+ ++LP
Sbjct: 212 SQMFITGPDVIKTVTGEDVTMEELGGAHTHMAKSGTAHYVASGEQDAFDWVRDVLSYLPS 271
Query: 181 SNRLHSPIRHSHDPP-----DRLVPS---LDTIVPLESTAAYNMLDVIYGVVDESEFFEI 336
+N +P R+S P D L LDT++P Y+M +V+ ++DE EF E+
Sbjct: 272 NNFTDAP-RYSKPVPHGSIEDNLTAKDLELDTLIPDSPNQPYDMHEVVTRLLDEEEFLEV 330
Query: 337 MPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFV 516
YA NI++G GR+ R VGI+ NQP AGCLDINAS K ARFVR CD FNIP++ V
Sbjct: 331 QAGYATNIVVGLGRIDDRPVGIVANQPIQFAGCLDINASEKAARFVRVCDCFNIPIVMLV 390
Query: 517 DVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDIN 696
DVPGFLPGT QEY GIIR GAKLL+AY EATVPKIT+ITRKAYGGAY VM SK++ D+N
Sbjct: 391 DVPGFLPGTEQEYDGIIRRGAKLLFAYGEATVPKITVITRKAYGGAYCVMGSKNMGCDVN 450
Query: 697 YAWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLTKEAEYVDKFANPFPAAVRG 843
AWPTA++AVMGA GAV ++R ++ +L + EY D NP+ AA RG
Sbjct: 451 LAWPTAQIAVMGASGAVGFVYRKELAQAAKNGANVDELRLQLQQEYEDTLVNPYIAAERG 510
Query: 844 FVDDIIEPRRTRAKICQDLDLLQ 912
+VD +I P TR I L LL+
Sbjct: 511 YVDAVIPPSHTRGYIATALHLLE 533
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 305 bits (780), Expect = 2e-82
Identities = 157/311 (50%), Positives = 210/311 (67%), Gaps = 9/311 (2%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
+++FITGP V+KSVT EDVT +ELGGA+ H ISG H E+D A + ++ +FLPQ
Sbjct: 199 AHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQ 258
Query: 181 SNRLHSPIRHSHDPPDRLVPS--LDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAK 354
+N + + P + + P+ L IVP++ Y++ DVI +VD ++ E+ YA
Sbjct: 259 NNTEEASFVN---PNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYAT 315
Query: 355 NIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFL 534
N++ F R++GR+VGI+ NQP V +GCLDINAS K A FV FCD+FNIPL+ VDVPGFL
Sbjct: 316 NLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFL 375
Query: 535 PGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTA 714
PG QEYGGIIRHGAK+LYAY+EATVPKIT++ RKAYGG+Y M ++ L D YAWP+A
Sbjct: 376 PGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSA 435
Query: 715 EVAVMGAKGAVQIIFR-------GSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRR 873
E+AVMGA+GA +IFR + + K EY + F P+ AA RG VDD+I+P
Sbjct: 436 EIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPAD 495
Query: 874 TRAKICQDLDL 906
TR KI L++
Sbjct: 496 TRRKIASALEM 506
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 506
Score = 286 bits (731), Expect = 7e-77
Identities = 151/312 (48%), Positives = 202/312 (64%), Gaps = 9/312 (2%)
Frame = +1
Query: 7 LFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQSN 186
+FITGP V++ VT E V E LGGA H +SG AH + + + L +R+ ++LP +
Sbjct: 186 MFITGPKVIEKVTGEQVDAESLGGAGIHNAVSGNAHFSGHTEKEVLTGVRKLLSYLPLNG 245
Query: 187 RLHSPIRHSHDPPDRLV--PSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAKNI 360
R P P++ P L+ +VP ++T Y++ VI + D FFEI P +AKNI
Sbjct: 246 RTTEP------KPEKEASRPLLNRLVPADTTKPYDVRKVIRELADPQSFFEIQPFFAKNI 299
Query: 361 IIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLPG 540
+IGF R+ + +GI+ +QPK AG L I+A+ K ARF+RFCDAF+IPLLT DVPGFLPG
Sbjct: 300 VIGFARLGEKAIGIVASQPKHLAGSLTIDAADKAARFIRFCDAFDIPLLTVEDVPGFLPG 359
Query: 541 TVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEV 720
QE+ GIIRHGAKLL+AYAEATVPK+T+I RKAYGGAY M+SK + D+ +AWP AE+
Sbjct: 360 IQQEHNGIIRHGAKLLFAYAEATVPKVTLIIRKAYGGAYVAMNSKAIGADLVFAWPNAEI 419
Query: 721 AVMGAKGAVQIIF----RGSGSEQLTKE---AEYVDKFANPFPAAVRGFVDDIIEPRRTR 879
AVMG +GA I++ + S Q TK AEY + A P+ AA G VDDII P +R
Sbjct: 420 AVMGPEGAASILYEKEIKASADPQKTKREKTAEYKKQNAGPYKAAACGMVDDIILPEESR 479
Query: 880 AKICQDLDLLQH 915
++ Q +L H
Sbjct: 480 GRLIQAFHMLTH 491
>sp|P63408|PCC6_MYCBO Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
sp|P63407|PCC6_MYCTU Probable propionyl-CoA carboxylase beta chain 6 (PCCase)
(Propanoyl-CoA:carbon dioxide ligase)
Length = 473
Score = 230 bits (586), Expect = 5e-60
Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%)
Frame = +1
Query: 1 SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 180
S +F+TGPDVV+SVT EDV LGG +TH SGV H ++++DA R Q
Sbjct: 155 SRVFVTGPDVVRSVTGEDVDMASLGGPETHHKKSGVCHIVADDELDAYDRGRRLVGLFCQ 214
Query: 181 SNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVD-ESEFFEIMPTYAKN 357
+ D + ++P S AY++ ++ ++D ++ F E +A +
Sbjct: 215 QGHFDRSKAEAGDT------DIHALLPESSRRAYDVRPIVTAILDADTPFDEFQANWAPS 268
Query: 358 IIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFLP 537
+++G GR+ GRTVG++ N P GCL+ ++ K ARFVR CDAF IPL+ VDVPG+LP
Sbjct: 269 MVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLP 328
Query: 538 GTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAE 717
G QE+GG++R GAKLL+A+ E TVP++T++TRK YGGAY M+S+ L +AWP AE
Sbjct: 329 GVDQEWGGVVRRGAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAE 388
Query: 718 VAVMGAKGAVQIIFRGSGSEQLTKEAEYV--------DKFANPFPAAVR-GFVDDIIEPR 870
VAVMGAK AV I+ + + E E + ++ A +A+ G VD+ I+P
Sbjct: 389 VAVMGAKAAVGILHKKKLAAAPEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPA 448
Query: 871 RTRAKICQDL 900
TR+K+ + L
Sbjct: 449 HTRSKLTEAL 458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,792,548
Number of Sequences: 369166
Number of extensions: 2376055
Number of successful extensions: 6739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6698
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)