Planaria EST Database

DrC_01120

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01120
         (826 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BMJ3|IF1AX_MOUSE  Eukaryotic translation initiation fac...   196   6e-50
sp|O14602|IF1AY_HUMAN  Eukaryotic translation initiation fac...   196   8e-50
sp|Q6GVM3|IF1AY_PANTR  Eukaryotic translation initiation fac...   195   1e-49
sp|Q6VV72|IF1A_RAT  Eukaryotic translation initiation factor...   194   2e-49
sp|O75642|IF1AH_HUMAN  Putative eukaryotic translation initi...   194   2e-49
sp|P47814|IF1A_RABIT  Eukaryotic translation initiation fact...   186   5e-47
sp|P47815|IF1A_WHEAT  Eukaryotic translation initiation fact...   172   8e-43
sp|P55877|IF1A_SCHPO  Eukaryotic translation initiation fact...   171   2e-42
sp|P38912|IF1A_YEAST  Eukaryotic translation initiation fact...   170   5e-42
sp|P56331|IF1A_ONOVI  Eukaryotic translation initiation fact...   168   2e-41

>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  196 bits (498), Expect = 6e-50
 Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +I+FD
Sbjct: 128 EIQFD 132

>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  196 bits (497), Expect = 8e-50
 Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +I+FD
Sbjct: 128 EIQFD 132

>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  195 bits (496), Expect = 1e-49
 Identities = 94/125 (75%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +++FD
Sbjct: 128 EVQFD 132

>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
           (Liver regeneration-related protein LRRG048)
 sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
          Length = 144

 Score =  194 bits (494), Expect = 2e-49
 Identities = 93/125 (74%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIIL+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +I+FD
Sbjct: 128 EIQFD 132

>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
           (eIF-4C)
          Length = 144

 Score =  194 bits (494), Expect = 2e-49
 Identities = 94/125 (75%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIILVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +I+FD
Sbjct: 128 EIQFD 132

>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  186 bits (473), Expect = 5e-47
 Identities = 92/125 (73%), Positives = 107/125 (85%), Gaps = 8/125 (6%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA  FDG KRL HIRGKLRK
Sbjct: 8   GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 472
           KVWIN  DIILVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D+
Sbjct: 68  KVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127

Query: 473 DIEFD 487
           +I+FD
Sbjct: 128 EIQFD 132

>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  172 bits (437), Expect = 8e-43
 Identities = 80/115 (69%), Positives = 97/115 (84%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNR+RGKNE +  KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ K
Sbjct: 8   GGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 481
           KVWI  GDI+LVGLRDYQD+KADVI+KY  +EAR LKAYGE+PD V++ E  D++
Sbjct: 68  KVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122

>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 138

 Score =  171 bits (433), Expect = 2e-42
 Identities = 86/130 (66%), Positives = 98/130 (75%), Gaps = 10/130 (7%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNRRRGKNENE  KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRK
Sbjct: 8   GGKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EE 466
           KVWINQGDIIL+ LR++QD K DVI+KY A+EAR LK  GE+P+  KI          E+
Sbjct: 68  KVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGED 127

Query: 467 DNDIEFDAAA 496
           D D EFD  A
Sbjct: 128 DLDFEFDVDA 137

>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 153

 Score =  170 bits (430), Expect = 5e-42
 Identities = 82/138 (59%), Positives = 101/138 (73%), Gaps = 8/138 (5%)
 Frame = +2

Query: 119 GYKVPSGGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHI 298
           G K   GGK  RRGKN+++  KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HI
Sbjct: 2   GKKNTKGGKKGRRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHI 61

Query: 299 RGKLRKKVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI------ 460
           RGKLRKKVW+ QGDIILV LRD+QD++ DV+ KYN +EAR LK  GE+P+N KI      
Sbjct: 62  RGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNF 121

Query: 461 --EEDNDIEFDAAAAQTD 508
             E D D+ F+   A  D
Sbjct: 122 GFESDEDVNFEFGNADED 139

>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 145

 Score =  168 bits (425), Expect = 2e-41
 Identities = 79/110 (71%), Positives = 93/110 (84%)
 Frame = +2

Query: 137 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 316
           GGKNR+RGKNE +  KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ K
Sbjct: 8   GGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK 67

Query: 317 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 466
           KVWI  GDIILVGLRDYQD+KADVI+K   +EAR LKAYGE+PDN ++ E
Sbjct: 68  KVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,903,509
Number of Sequences: 369166
Number of extensions: 1458533
Number of successful extensions: 3883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3883
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01120

  1. Dr_sW_028_P09
  2. Dr_sW_028_B03
  3. Dr_sW_028_E14
  4. Dr_sW_023_B10
  5. Dr_sW_016_B14
  6. Dr_sW_009_F05
  7. Dr_sW_025_D13
  8. Dr_sW_005_O15
  9. Dr_sW_005_O19
  10. Dr_sW_013_N19