Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B03
(605 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation fac... 189 4e-48
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation fac... 189 5e-48
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation fac... 189 6e-48
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor... 188 1e-47
sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initi... 188 1e-47
sp|P47814|IF1A_RABIT Eukaryotic translation initiation fact... 180 3e-45
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation fact... 166 4e-41
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation fact... 164 1e-40
sp|P38912|IF1A_YEAST Eukaryotic translation initiation fact... 162 6e-40
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation fact... 161 1e-39
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 189 bits (481), Expect = 4e-48
Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+
Sbjct: 71 INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 189 bits (480), Expect = 5e-48
Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+
Sbjct: 71 INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 189 bits (479), Expect = 6e-48
Identities = 91/122 (74%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++++
Sbjct: 71 INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
(Liver regeneration-related protein LRRG048)
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
Length = 144
Score = 188 bits (477), Expect = 1e-47
Identities = 90/122 (73%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIIL+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+
Sbjct: 71 INTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
(eIF-4C)
Length = 144
Score = 188 bits (477), Expect = 1e-47
Identities = 91/122 (74%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIILVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E D++I+
Sbjct: 71 INTSDIILVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 180 bits (456), Expect = 3e-45
Identities = 89/122 (72%), Positives = 104/122 (85%), Gaps = 8/122 (6%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA FDG KRL HIRGKLRKKVW
Sbjct: 11 NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 337
IN DIILVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+
Sbjct: 71 INTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130
Query: 338 FD 343
FD
Sbjct: 131 FD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 166 bits (420), Expect = 4e-41
Identities = 77/112 (68%), Positives = 94/112 (83%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVW
Sbjct: 11 NRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 337
I GDI+LVGLRDYQD+KADVI+KY +EAR LKAYGE+PD V++ E D++
Sbjct: 71 IAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 138
Score = 164 bits (416), Expect = 1e-40
Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 10/127 (7%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NRRRGKNENE KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKKVW
Sbjct: 11 NRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EEDND 331
INQGDIIL+ LR++QD K DVI+KY A+EAR LK GE+P+ KI E+D D
Sbjct: 71 INQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLD 130
Query: 332 IEFDAAA 352
EFD A
Sbjct: 131 FEFDVDA 137
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 153
Score = 162 bits (410), Expect = 6e-40
Identities = 77/127 (60%), Positives = 96/127 (75%), Gaps = 8/127 (6%)
Frame = +2
Query: 8 RRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWIN 187
RRGKN+++ KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRKKVW+
Sbjct: 13 RRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMG 72
Query: 188 QGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDNDIEFD 343
QGDIILV LRD+QD++ DV+ KYN +EAR LK GE+P+N KI E D D+ F+
Sbjct: 73 QGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFE 132
Query: 344 AAAAQTD 364
A D
Sbjct: 133 FGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 145
Score = 161 bits (408), Expect = 1e-39
Identities = 76/107 (71%), Positives = 90/107 (84%)
Frame = +2
Query: 2 NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 181
NR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVW
Sbjct: 11 NRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVW 70
Query: 182 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 322
I GDIILVGLRDYQD+KADVI+K +EAR LKAYGE+PDN ++ E
Sbjct: 71 IAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,290,838
Number of Sequences: 369166
Number of extensions: 946055
Number of successful extensions: 2643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)