Planarian EST Database


Dr_sW_005_O15

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_005_O15
         (599 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BMJ3|IF1AX_MOUSE  Eukaryotic translation initiation fac...   189   4e-48
sp|O14602|IF1AY_HUMAN  Eukaryotic translation initiation fac...   189   5e-48
sp|Q6GVM3|IF1AY_PANTR  Eukaryotic translation initiation fac...   189   6e-48
sp|Q6VV72|IF1A_RAT  Eukaryotic translation initiation factor...   188   1e-47
sp|O75642|IF1AH_HUMAN  Putative eukaryotic translation initi...   188   1e-47
sp|P47814|IF1A_RABIT  Eukaryotic translation initiation fact...   180   3e-45
sp|P47815|IF1A_WHEAT  Eukaryotic translation initiation fact...   166   4e-41
sp|P55877|IF1A_SCHPO  Eukaryotic translation initiation fact...   164   1e-40
sp|P38912|IF1A_YEAST  Eukaryotic translation initiation fact...   162   6e-40
sp|P56331|IF1A_ONOVI  Eukaryotic translation initiation fact...   161   1e-39
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  189 bits (481), Expect = 4e-48
 Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+
Sbjct: 71  INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  189 bits (480), Expect = 5e-48
 Identities = 92/122 (75%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+
Sbjct: 71  INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  189 bits (479), Expect = 6e-48
 Identities = 91/122 (74%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++++
Sbjct: 71  INTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
           (Liver regeneration-related protein LRRG048)
 sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
          Length = 144

 Score =  188 bits (477), Expect = 1e-47
 Identities = 90/122 (73%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIIL+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+
Sbjct: 71  INTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
           (eIF-4C)
          Length = 144

 Score =  188 bits (477), Expect = 1e-47
 Identities = 91/122 (74%), Positives = 106/122 (86%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIILVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E        D++I+
Sbjct: 71  INTSDIILVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  180 bits (456), Expect = 3e-45
 Identities = 89/122 (72%), Positives = 104/122 (85%), Gaps = 8/122 (6%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA  FDG KRL HIRGKLRKKVW
Sbjct: 11  NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIE 338
           IN  DIILVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+
Sbjct: 71  INTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQ 130

Query: 339 FD 344
           FD
Sbjct: 131 FD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  166 bits (420), Expect = 4e-41
 Identities = 77/112 (68%), Positives = 94/112 (83%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NR+RGKNE +  KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVW
Sbjct: 11  NRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 338
           I  GDI+LVGLRDYQD+KADVI+KY  +EAR LKAYGE+PD V++ E  D++
Sbjct: 71  IAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 138

 Score =  164 bits (416), Expect = 1e-40
 Identities = 83/127 (65%), Positives = 95/127 (74%), Gaps = 10/127 (7%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NRRRGKNENE  KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKKVW
Sbjct: 11  NRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EEDND 332
           INQGDIIL+ LR++QD K DVI+KY A+EAR LK  GE+P+  KI          E+D D
Sbjct: 71  INQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLD 130

Query: 333 IEFDAAA 353
            EFD  A
Sbjct: 131 FEFDVDA 137
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 153

 Score =  162 bits (410), Expect = 6e-40
 Identities = 77/127 (60%), Positives = 96/127 (75%), Gaps = 8/127 (6%)
 Frame = +3

Query: 9   RRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWIN 188
           RRGKN+++  KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRKKVW+ 
Sbjct: 13  RRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMG 72

Query: 189 QGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDNDIEFD 344
           QGDIILV LRD+QD++ DV+ KYN +EAR LK  GE+P+N KI        E D D+ F+
Sbjct: 73  QGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFE 132

Query: 345 AAAAQTD 365
              A  D
Sbjct: 133 FGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 145

 Score =  161 bits (408), Expect = 1e-39
 Identities = 76/107 (71%), Positives = 90/107 (84%)
 Frame = +3

Query: 3   NRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVW 182
           NR+RGKNE +  KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVW
Sbjct: 11  NRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVW 70

Query: 183 INQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 323
           I  GDIILVGLRDYQD+KADVI+K   +EAR LKAYGE+PDN ++ E
Sbjct: 71  IAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,925,702
Number of Sequences: 369166
Number of extensions: 933179
Number of successful extensions: 2536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)