Planarian EST Database


Dr_sW_016_B14

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_016_B14
         (623 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BMJ3|IF1AX_MOUSE  Eukaryotic translation initiation fac...   169   5e-42
sp|O14602|IF1AY_HUMAN  Eukaryotic translation initiation fac...   169   7e-42
sp|Q6GVM3|IF1AY_PANTR  Eukaryotic translation initiation fac...   168   9e-42
sp|Q6VV72|IF1A_RAT  Eukaryotic translation initiation factor...   167   2e-41
sp|O75642|IF1AH_HUMAN  Putative eukaryotic translation initi...   167   2e-41
sp|P47814|IF1A_RABIT  Eukaryotic translation initiation fact...   159   4e-39
sp|P47815|IF1A_WHEAT  Eukaryotic translation initiation fact...   152   7e-37
sp|P38912|IF1A_YEAST  Eukaryotic translation initiation fact...   151   1e-36
sp|P56331|IF1A_ONOVI  Eukaryotic translation initiation fact...   147   2e-35
sp|P55877|IF1A_SCHPO  Eukaryotic translation initiation fact...   144   1e-34
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
           X isoform) (eIF-4C)
 sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  169 bits (428), Expect = 5e-42
 Identities = 82/110 (74%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN  DIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+FD
Sbjct: 83  DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  169 bits (427), Expect = 7e-42
 Identities = 82/110 (74%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN  DIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+FD
Sbjct: 83  DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
           Y isoform) (eIF-4C)
          Length = 144

 Score =  168 bits (426), Expect = 9e-42
 Identities = 81/110 (73%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN  DIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++++FD
Sbjct: 83  DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQFD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
           (Liver regeneration-related protein LRRG048)
 sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
          Length = 144

 Score =  167 bits (424), Expect = 2e-41
 Identities = 80/110 (72%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKKVWIN  DIIL+GLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+FD
Sbjct: 83  DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
           (eIF-4C)
          Length = 144

 Score =  167 bits (424), Expect = 2e-41
 Identities = 81/110 (73%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN  DIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           DYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E        D++I+FD
Sbjct: 83  DYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  159 bits (403), Expect = 4e-39
 Identities = 79/110 (71%), Positives = 93/110 (84%), Gaps = 8/110 (7%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V K+LGNGRLEA  FDG KRL HIRGKLRKKVWIN  DIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 368
           +YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E        D++I+FD
Sbjct: 83  EYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 144

 Score =  152 bits (384), Expect = 7e-37
 Identities = 70/100 (70%), Positives = 85/100 (85%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI  GDI+LVGLR
Sbjct: 23  KRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 362
           DYQD+KADVI+KY  +EAR LKAYGE+PD V++ E  D++
Sbjct: 83  DYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 153

 Score =  151 bits (382), Expect = 1e-36
 Identities = 72/117 (61%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRKKVW+ QGDIILV LR
Sbjct: 23  KRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDNDIEFDAAAAQTD 389
           D+QD++ DV+ KYN +EAR LK  GE+P+N KI        E D D+ F+   A  D
Sbjct: 83  DFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFEFGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 145

 Score =  147 bits (372), Expect = 2e-35
 Identities = 69/95 (72%), Positives = 81/95 (85%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI  GDIILVGLR
Sbjct: 23  KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 347
           DYQD+KADVI+K   +EAR LKAYGE+PDN ++ E
Sbjct: 83  DYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
          Length = 138

 Score =  144 bits (364), Expect = 1e-34
 Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 10/115 (8%)
 Frame = +3

Query: 63  KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 242
           KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKKVWINQGDIIL+ LR
Sbjct: 23  KRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLR 82

Query: 243 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EEDNDIEFDAAA 377
           ++QD K DVI+KY A+EAR LK  GE+P+  KI          E+D D EFD  A
Sbjct: 83  EFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEFDVDA 137
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,945,485
Number of Sequences: 369166
Number of extensions: 938159
Number of successful extensions: 2418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)