Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E14
(746 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation fac... 194 3e-49
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation fac... 193 4e-49
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation fac... 193 5e-49
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor... 192 8e-49
sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initi... 192 8e-49
sp|P47814|IF1A_RABIT Eukaryotic translation initiation fact... 184 2e-46
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation fact... 170 3e-42
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation fact... 169 9e-42
sp|P38912|IF1A_YEAST Eukaryotic translation initiation fact... 166 5e-41
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation fact... 166 8e-41
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 194 bits (492), Expect = 3e-49
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
I+FD
Sbjct: 129 IQFD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 193 bits (491), Expect = 4e-49
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
I+FD
Sbjct: 129 IQFD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 193 bits (490), Expect = 5e-49
Identities = 93/124 (75%), Positives = 108/124 (87%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
++FD
Sbjct: 129 VQFD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
(Liver regeneration-related protein LRRG048)
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
Length = 144
Score = 192 bits (488), Expect = 8e-49
Identities = 92/124 (74%), Positives = 108/124 (87%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIIL+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
I+FD
Sbjct: 129 IQFD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
(eIF-4C)
Length = 144
Score = 192 bits (488), Expect = 8e-49
Identities = 93/124 (75%), Positives = 108/124 (87%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIILVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
I+FD
Sbjct: 129 IQFD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 184 bits (467), Expect = 2e-46
Identities = 91/124 (73%), Positives = 106/124 (85%), Gaps = 8/124 (6%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA FDG KRL HIRGKLRKK
Sbjct: 9 GKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DND 475
VWIN DIILVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++
Sbjct: 69 VWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
Query: 476 IEFD 487
I+FD
Sbjct: 129 IQFD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 170 bits (431), Expect = 3e-42
Identities = 79/114 (69%), Positives = 96/114 (84%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KK
Sbjct: 9 GKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 481
VWI GDI+LVGLRDYQD+KADVI+KY +EAR LKAYGE+PD V++ E D++
Sbjct: 69 VWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 138
Score = 169 bits (427), Expect = 9e-42
Identities = 85/129 (65%), Positives = 97/129 (75%), Gaps = 10/129 (7%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNRRRGKNENE KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKK
Sbjct: 9 GKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EED 469
VWINQGDIIL+ LR++QD K DVI+KY A+EAR LK GE+P+ KI E+D
Sbjct: 69 VWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDD 128
Query: 470 NDIEFDAAA 496
D EFD A
Sbjct: 129 LDFEFDVDA 137
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 153
Score = 166 bits (421), Expect = 5e-41
Identities = 81/138 (58%), Positives = 100/138 (72%), Gaps = 8/138 (5%)
Frame = +2
Query: 119 GYKVPSFGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHI 298
G K GK RRGKN+++ KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HI
Sbjct: 2 GKKNTKGGKKGRRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHI 61
Query: 299 RGKLRKKVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI------ 460
RGKLRKKVW+ QGDIILV LRD+QD++ DV+ KYN +EAR LK GE+P+N KI
Sbjct: 62 RGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNF 121
Query: 461 --EEDNDIEFDAAAAQTD 508
E D D+ F+ A D
Sbjct: 122 GFESDEDVNFEFGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 145
Score = 166 bits (419), Expect = 8e-41
Identities = 78/109 (71%), Positives = 92/109 (84%)
Frame = +2
Query: 140 GKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKK 319
GKNR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KK
Sbjct: 9 GKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKK 68
Query: 320 VWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 466
VWI GDIILVGLRDYQD+KADVI+K +EAR LKAYGE+PDN ++ E
Sbjct: 69 VWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,467,427
Number of Sequences: 369166
Number of extensions: 1325517
Number of successful extensions: 3596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3596
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)