Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B10
(607 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation fac... 196 4e-50
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation fac... 196 5e-50
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation fac... 195 7e-50
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor... 194 1e-49
sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initi... 194 1e-49
sp|P47814|IF1A_RABIT Eukaryotic translation initiation fact... 186 3e-47
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation fact... 172 5e-43
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation fact... 171 1e-42
sp|P38912|IF1A_YEAST Eukaryotic translation initiation fact... 168 1e-41
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation fact... 168 1e-41
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 196 bits (498), Expect = 4e-50
Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+I+FD
Sbjct: 128 EIQFD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 196 bits (497), Expect = 5e-50
Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+I+FD
Sbjct: 128 EIQFD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 195 bits (496), Expect = 7e-50
Identities = 94/125 (75%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIILVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+++FD
Sbjct: 128 EVQFD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
(Liver regeneration-related protein LRRG048)
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
Length = 144
Score = 194 bits (494), Expect = 1e-49
Identities = 93/125 (74%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIIL+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+I+FD
Sbjct: 128 EIQFD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
(eIF-4C)
Length = 144
Score = 194 bits (494), Expect = 1e-49
Identities = 94/125 (75%), Positives = 109/125 (87%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIILVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+I+FD
Sbjct: 128 EIQFD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 186 bits (473), Expect = 3e-47
Identities = 92/125 (73%), Positives = 107/125 (85%), Gaps = 8/125 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE+ KREL++KEDGQEYA+V K+LGNGRLEA FDG KRL HIRGKLRK
Sbjct: 8 GGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DN 337
KVWIN DIILVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D+
Sbjct: 68 KVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDD 127
Query: 338 DIEFD 352
+I+FD
Sbjct: 128 EIQFD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 172 bits (437), Expect = 5e-43
Identities = 80/115 (69%), Positives = 97/115 (84%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ K
Sbjct: 8 GGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 346
KVWI GDI+LVGLRDYQD+KADVI+KY +EAR LKAYGE+PD V++ E D++
Sbjct: 68 KVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 138
Score = 171 bits (433), Expect = 1e-42
Identities = 86/130 (66%), Positives = 98/130 (75%), Gaps = 10/130 (7%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNRRRGKNENE KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRK
Sbjct: 8 GGKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EE 331
KVWINQGDIIL+ LR++QD K DVI+KY A+EAR LK GE+P+ KI E+
Sbjct: 68 KVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGED 127
Query: 332 DNDIEFDAAA 361
D D EFD A
Sbjct: 128 DLDFEFDVDA 137
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 153
Score = 168 bits (425), Expect = 1e-41
Identities = 80/132 (60%), Positives = 99/132 (75%), Gaps = 8/132 (6%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGK RRGKN+++ KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRK
Sbjct: 8 GGKKGRRGKNDSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDN 337
KVW+ QGDIILV LRD+QD++ DV+ KYN +EAR LK GE+P+N KI E D
Sbjct: 68 KVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDE 127
Query: 338 DIEFDAAAAQTD 373
D+ F+ A D
Sbjct: 128 DVNFEFGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 145
Score = 168 bits (425), Expect = 1e-41
Identities = 79/110 (71%), Positives = 93/110 (84%)
Frame = +2
Query: 2 GGKNRRRGKNENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRK 181
GGKNR+RGKNE + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ K
Sbjct: 8 GGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHK 67
Query: 182 KVWINQGDIILVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 331
KVWI GDIILVGLRDYQD+KADVI+K +EAR LKAYGE+PDN ++ E
Sbjct: 68 KVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,484,998
Number of Sequences: 369166
Number of extensions: 948243
Number of successful extensions: 2623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2623
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)