Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N19
(644 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation fac... 169 6e-42
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation fac... 169 7e-42
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation fac... 168 1e-41
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor... 167 2e-41
sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initi... 167 2e-41
sp|P47814|IF1A_RABIT Eukaryotic translation initiation fact... 159 4e-39
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation fact... 152 7e-37
sp|P38912|IF1A_YEAST Eukaryotic translation initiation fact... 151 1e-36
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation fact... 147 2e-35
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation fact... 144 1e-34
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 169 bits (428), Expect = 6e-42
Identities = 82/110 (74%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 83 DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 169 bits (427), Expect = 7e-42
Identities = 82/110 (74%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 83 DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 168 bits (426), Expect = 1e-41
Identities = 81/110 (73%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++++FD
Sbjct: 83 DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQFD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
(Liver regeneration-related protein LRRG048)
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
Length = 144
Score = 167 bits (424), Expect = 2e-41
Identities = 80/110 (72%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKKVWIN DIIL+GLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
DYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 83 DYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
(eIF-4C)
Length = 144
Score = 167 bits (424), Expect = 2e-41
Identities = 81/110 (73%), Positives = 95/110 (86%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
DYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E D++I+FD
Sbjct: 83 DYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 159 bits (403), Expect = 4e-39
Identities = 79/110 (71%), Positives = 93/110 (84%), Gaps = 8/110 (7%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V K+LGNGRLEA FDG KRL HIRGKLRKKVWIN DIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 313
+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 83 EYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 152 bits (384), Expect = 7e-37
Identities = 70/100 (70%), Positives = 85/100 (85%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI GDI+LVGLR
Sbjct: 23 KRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 307
DYQD+KADVI+KY +EAR LKAYGE+PD V++ E D++
Sbjct: 83 DYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 153
Score = 151 bits (382), Expect = 1e-36
Identities = 72/117 (61%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRKKVW+ QGDIILV LR
Sbjct: 23 KRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDNDIEFDAAAAQTD 334
D+QD++ DV+ KYN +EAR LK GE+P+N KI E D D+ F+ A D
Sbjct: 83 DFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFEFGNADED 139
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 145
Score = 147 bits (372), Expect = 2e-35
Identities = 69/95 (72%), Positives = 81/95 (85%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI GDIILVGLR
Sbjct: 23 KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 292
DYQD+KADVI+K +EAR LKAYGE+PDN ++ E
Sbjct: 83 DYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 138
Score = 144 bits (364), Expect = 1e-34
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 10/115 (8%)
Frame = +2
Query: 8 KRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDIILVGLR 187
KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKKVWINQGDIIL+ LR
Sbjct: 23 KRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLR 82
Query: 188 DYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EEDNDIEFDAAA 322
++QD K DVI+KY A+EAR LK GE+P+ KI E+D D EFD A
Sbjct: 83 EFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEFDVDA 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,742,897
Number of Sequences: 369166
Number of extensions: 1057955
Number of successful extensions: 2677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2677
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)