Planarian EST Database

DrC_01055

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01055 TGCCACGTCTATATATTGGAAATTTGCCCAGACGAATTGAGGAAAGGGACATAAAAAAGT TTTTTCGAGAATATGGTCGTATTCGTAGCGTTGACTTAAAAAACGGTTATGGATTTGTGG AAATTGATGATCGCAGGGATGCAGAAGATGCTATTCACGATTTAGATGGTACAAAGTTGC TTGGTGAGAGAGTTACTGTTGAAATGGCTCGTTCCAATGCTAGATTTGGAGGTGGAGGAG ATAGAGGTGGTGGAGGTGACAGAGGTGGACGAGGATTCGATAATAGAAACAATCGGTATG ACAGCAGAGACTCTCGGGATAGATACAATTCTAGAAAGCCGATAAGATCAGAACATCGAA TTATTGTGGATGGTTTGTCATCCAGGGTTAGCTGGCAAGACTTGAAAGATCTAATGCGAA AGGTTGGTGAAGTAACTTTCGCAGATGCACACAAATTGAGACAAAACCAGGGCGTTGTCG AGTTTTCAAACAGTTCCGACATGAAGGCTGCAATTGATAAATATGATGGTTACGAATTAT ACGGGTATAATCTGAAAGTTCATGAAGATCGCGGAGGCGGAATGAAACGCAAATCTCGAA GTCGCTCGTATCATCGCCGAAGAAGTAGCAGCAGATCAAAACGATCCGCAAGTAAATCCA GGAGTCGGTCTAGAAGCAAATCAAGTCGAAAACGTTCAAGAAGTCGCAAAAGATCGTCTA GTCGTAAGCGCTCCGACAGTCGCAAACGATCACGTAGCTACAGGTCTAAGTCAAGGAGTG CTAAGTCTTATTCTAAATCAAAGAGTCCTGTGCAGAAGTGGGCAGTTGAGGATGAAAATG ATTCAAAGTCCAAATCGAAATCTAAATCGGTTTCAAGAAGTAGATCTCGATCAATGGAAA AGAAGAATTCTCCTAAATCTAGGTCTAAATCCTTGTCCAAGGAAAGGGAAGAACGTAGTG TTTCGCGAAGCAGAAGTCGTAGTAGAAGTATGAGTAAGAGTAGAAGCAGGTCAAATTCTC CTGGTGACCAAGAGTCTGTTAAATCGGCATGTAGTGATGCTGAAGATCGACCAAATCCTG AAGAAGATGCATCTAATGAAAATGTAAATGATGAAAACATGGA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01055
         (1123 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13247|SFRS6_HUMAN  Splicing factor, arginine/serine-rich...   174   5e-43
sp|P26686|SRR55_DROME  Serine-arginine protein 55 (SRP55) (E...   173   9e-43
sp|Q08170|SFRS4_HUMAN  Splicing factor, arginine/serine-rich...   168   2e-41
sp|Q8VE97|SFRS4_MOUSE  Splicing factor, arginine/serine-rich 4    168   2e-41
sp|Q09167|SFRS5_RAT  Splicing factor, arginine/serine-rich 5...   161   3e-39
sp|Q13243|SFRS5_HUMAN  Splicing factor, arginine/serine-rich...   161   3e-39
sp|O35326|SFRS5_MOUSE  Splicing factor, arginine/serine-rich...   145   2e-34
sp|Q23121|RSP1_CAEEL  Probable splicing factor, arginine/ser...   142   1e-33
sp|Q23120|RSP2_CAEEL  Probable splicing factor, arginine/ser...   135   3e-31
sp|P78814|SRP2_SCHPO  Pre-mRNA splicing factor srp2               125   2e-28

>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
           SRP55)
          Length = 344

 Score =  174 bits (440), Expect = 5e-43
 Identities = 90/189 (47%), Positives = 118/189 (62%)
 Frame = +3

Query: 3   PRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLL 182
           PR+YIG L   + E+DI++FF  YGR+  VDLKNGYGFVE +D RDA+DA+++L+G +L 
Sbjct: 2   PRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61

Query: 183 GERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRI 362
           GERV VE AR                                          P+R+E+R+
Sbjct: 62  GERVIVEHARG---------PRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRL 112

Query: 363 IVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELY 542
           IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ 
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEIN 172

Query: 543 GYNLKVHED 569
           G N+++ ED
Sbjct: 173 GRNIRLIED 181

>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
           bracketing protein) (B52 protein)
          Length = 376

 Score =  173 bits (438), Expect = 9e-43
 Identities = 90/188 (47%), Positives = 120/188 (63%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R+Y+G LP  + ERD+++FF+ YGR R + +KNGYGFVE +D RDA+DA+++L+G +LLG
Sbjct: 5   RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLG 64

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
           ERV VE AR  A                                       P+R+E+R+I
Sbjct: 65  ERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGP-PLRTEYRLI 123

Query: 366 VDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYG 545
           V+ LSSRVSWQDLKD MR+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D  EL G
Sbjct: 124 VENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNG 183

Query: 546 YNLKVHED 569
             + + ED
Sbjct: 184 RRIHLVED 191

>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
           SRP75) (SRP001LB)
          Length = 494

 Score =  168 bits (426), Expect = 2e-41
 Identities = 89/189 (47%), Positives = 117/189 (61%)
 Frame = +3

Query: 3   PRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLL 182
           PR+YIG L  +  ERD+++FF+ YG+I  VDLKNGYGFVE DD RDA+DA+++L+G  L 
Sbjct: 2   PRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61

Query: 183 GERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRI 362
           GERV VE AR                                          P R+E+R+
Sbjct: 62  GERVIVEHARG---------------PRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRL 106

Query: 363 IVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELY 542
           IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ 
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVN 166

Query: 543 GYNLKVHED 569
           G  +++ ED
Sbjct: 167 GRKIRLVED 175

>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
          Length = 489

 Score =  168 bits (426), Expect = 2e-41
 Identities = 89/189 (47%), Positives = 117/189 (61%)
 Frame = +3

Query: 3   PRLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLL 182
           PR+YIG L  +  ERD+++FF+ YG+I  VDLKNGYGFVE DD RDA+DA+++L+G  L 
Sbjct: 2   PRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61

Query: 183 GERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRI 362
           GERV VE AR                                          P R+E+R+
Sbjct: 62  GERVIVEHARG---------------PRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRL 106

Query: 363 IVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELY 542
           IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ 
Sbjct: 107 IVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVN 166

Query: 543 GYNLKVHED 569
           G  +++ ED
Sbjct: 167 GRKIRLVED 175

>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Insulin-induced growth response protein CL-4)
           (Delayed-early protein HRS)
          Length = 269

 Score =  161 bits (408), Expect = 3e-39
 Identities = 83/187 (44%), Positives = 117/187 (62%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
           ERVT+E AR+ +                                       P+R+E+R+I
Sbjct: 65  ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-------------PVRTENRLI 111

Query: 366 VDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYG 545
           V+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K  G E+ G
Sbjct: 112 VENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEING 171

Query: 546 YNLKVHE 566
             +K+ E
Sbjct: 172 RKIKLIE 178

>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 272

 Score =  161 bits (408), Expect = 3e-39
 Identities = 83/187 (44%), Positives = 117/187 (62%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
           ERVT+E AR+ +                                       P+R+E+R+I
Sbjct: 65  ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-------------PVRTENRLI 111

Query: 366 VDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYG 545
           V+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K  G E+ G
Sbjct: 112 VENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEING 171

Query: 546 YNLKVHE 566
             +K+ E
Sbjct: 172 RKIKLIE 178

>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 270

 Score =  145 bits (367), Expect = 2e-34
 Identities = 75/172 (43%), Positives = 106/172 (61%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R++IG L     E+D+++FF+ YGRIR +DLK G+GFVE +D RDA+DA+++LDG +L  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
           ERVT+E AR+ +                                         ++ +R+I
Sbjct: 65  ERVTIEHARARS-------------RGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLI 111

Query: 366 VDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 521
           V+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++  D+K AI+K
Sbjct: 112 VENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163

>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding
           protein srp-5) (CeSRp75)
          Length = 312

 Score =  142 bits (359), Expect = 1e-33
 Identities = 80/198 (40%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R+YIG L  R+ E+DI+ FFR YG+IR V LKNG+GFVE DD+RDAEDA+HDL+G +L G
Sbjct: 4   RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIR------ 347
           ERV ++ ++                                          P R      
Sbjct: 64  ERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRYGR 123

Query: 348 ---SEHRIIVDGLSSRVSWQDLKDLMRKVG-EVTFADAHKLRQNQGVVEFSNSSDMKAAI 515
              + HR++V+ LSSR+SWQDLKD +R+ G E T+A+AHK R N+ ++ F+  SD+K  I
Sbjct: 124 PYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK-RPNEALLCFATPSDLKRCI 182

Query: 516 DKYDGYELYGYNLKVHED 569
           +K DG +L G  +K+ +D
Sbjct: 183 EKCDGMDLNGRKIKMIDD 200

>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding
           protein srp-4) (CeSRp40)
          Length = 281

 Score =  135 bits (339), Expect = 3e-31
 Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           R+YIG LP R  +RD++ FFR YG++  V +KNG+GFV+  D+RDA+DA+HDL+G +L G
Sbjct: 3   RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
           ERV +E  R                                         +P  +  R++
Sbjct: 63  ERVILEFPRRKV-------GYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLV 115

Query: 366 VDGLSSRVSWQDLKDLMRKVG-EVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELY 542
           +D LS+R SWQD+KD +RK+G E T+++AHK   NQ +V F++  D++ A++K  G +L 
Sbjct: 116 IDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLN 175

Query: 543 GYNLKVHED 569
           G  LK  ++
Sbjct: 176 GRKLKCTDE 184

>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
          Length = 365

 Score =  125 bits (315), Expect = 2e-28
 Identities = 68/188 (36%), Positives = 95/188 (50%)
 Frame = +3

Query: 6   RLYIGNLPRRIEERDIKKFFREYGRIRSVDLKNGYGFVEIDDRRDAEDAIHDLDGTKLLG 185
           RL++G +P +    D+  FF+ YG+I    L NG+GFVE++D RDA D ++D  G + +G
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64

Query: 186 ERVTVEMARSNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPIRSEHRII 365
            R+ VE AR                                         +P R+  R+I
Sbjct: 65  SRIVVEPARGERRRRENFRESAASKYP-----------------------RPRRTGFRLI 101

Query: 366 VDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYG 545
           V+ LS  VSWQDLKD+MRK GE TF DAH+     GVVEFS   DM+ A+   +G  + G
Sbjct: 102 VENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKG 161

Query: 546 YNLKVHED 569
             + + ED
Sbjct: 162 QAVTLRED 169

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,712,491
Number of Sequences: 369166
Number of extensions: 1560547
Number of successful extensions: 4824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4737
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12440476260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01055

Planaria EST Database

DrC_01055

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail