Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_C11
(882 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 105 2e-22
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 103 8e-22
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 99 1e-20
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 99 1e-20
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 97 6e-20
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 97 6e-20
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 82 3e-15
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 78 4e-14
sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/ser... 77 8e-14
sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/ser... 70 1e-11
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 105 bits (262), Expect = 2e-22
Identities = 48/77 (62%), Positives = 63/77 (81%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P+R+E+R+IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R N+GV+EF + SDMK A+D
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 278 KYDGYELYGYNLKVHED 328
K DG E+ G N+++ ED
Sbjct: 165 KLDGTEINGRNIRLIED 181
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 103 bits (256), Expect = 8e-22
Identities = 49/77 (63%), Positives = 63/77 (81%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P+R+E+R+IV+ LSSRVSWQDLKD MR+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+
Sbjct: 115 PLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIE 174
Query: 278 KYDGYELYGYNLKVHED 328
K D EL G + + ED
Sbjct: 175 KLDDTELNGRRIHLVED 191
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 99.4 bits (246), Expect = 1e-20
Identities = 46/77 (59%), Positives = 62/77 (80%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P R+E+R+IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++
Sbjct: 99 PTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALE 158
Query: 278 KYDGYELYGYNLKVHED 328
K DG E+ G +++ ED
Sbjct: 159 KLDGTEVNGRKIRLVED 175
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 99.4 bits (246), Expect = 1e-20
Identities = 46/77 (59%), Positives = 62/77 (80%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P R+E+R+IV+ LSSR SWQDLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++
Sbjct: 99 PTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALE 158
Query: 278 KYDGYELYGYNLKVHED 328
K DG E+ G +++ ED
Sbjct: 159 KLDGTEVNGRKIRLVED 175
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 97.1 bits (240), Expect = 6e-20
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P+R+E+R+IV+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+
Sbjct: 103 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE 162
Query: 278 KYDGYELYGYNLKVHE 325
K G E+ G +K+ E
Sbjct: 163 KLSGKEINGRKIKLIE 178
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 97.1 bits (240), Expect = 6e-20
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +2
Query: 98 PIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAID 277
P+R+E+R+IV+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+
Sbjct: 103 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE 162
Query: 278 KYDGYELYGYNLKVHE 325
K G E+ G +K+ E
Sbjct: 163 KLSGKEINGRKIKLIE 178
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 81.6 bits (200), Expect = 3e-15
Identities = 37/59 (62%), Positives = 50/59 (84%)
Frame = +2
Query: 104 RSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 280
++ +R+IV+ LSSRVSWQDLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K
Sbjct: 105 KNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 77.8 bits (190), Expect = 4e-14
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +2
Query: 95 KPIRSEHRIIVDGLSSRVSWQDLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAI 274
+P R+ R+IV+ LS VSWQDLKD+MRK GE TF DAH+ GVVEFS DM+ A+
Sbjct: 92 RPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNAL 151
Query: 275 DKYDGYELYGYNLKVHED 328
+G + G + + ED
Sbjct: 152 TSLNGEVIKGQAVTLRED 169
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding
protein srp-5) (CeSRp75)
Length = 312
Score = 76.6 bits (187), Expect = 8e-14
Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = +2
Query: 95 KPIRSEHRIIVDGLSSRVSWQDLKDLMRKVG-EVTFADAHKLRQNQGVVEFSNSSDMKAA 271
+P + HR++V+ LSSR+SWQDLKD +R+ G E T+A+AHK R N+ ++ F+ SD+K
Sbjct: 123 RPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK-RPNEALLCFATPSDLKRC 181
Query: 272 IDKYDGYELYGYNLKVHED 328
I+K DG +L G +K+ +D
Sbjct: 182 IEKCDGMDLNGRKIKMIDD 200
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding
protein srp-4) (CeSRp40)
Length = 281
Score = 69.7 bits (169), Expect = 1e-11
Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 95 KPIRSEHRIIVDGLSSRVSWQDLKDLMRKVG-EVTFADAHKLRQNQGVVEFSNSSDMKAA 271
+P + R+++D LS+R SWQD+KD +RK+G E T+++AHK NQ +V F++ D++ A
Sbjct: 106 RPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDA 165
Query: 272 IDKYDGYELYGYNLKVHED 328
++K G +L G LK ++
Sbjct: 166 MNKLQGEDLNGRKLKCTDE 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,082,207
Number of Sequences: 369166
Number of extensions: 1124980
Number of successful extensions: 3108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3095
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)