Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_O07
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 78 8e-15
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 77 2e-14
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 76 3e-14
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 76 3e-14
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 67 2e-11
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 67 2e-11
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 58 1e-08
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 56 3e-08
sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (... 44 1e-04
sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (... 44 1e-04
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 78.2 bits (191), Expect = 8e-15
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDRGG 419
DLKD MR+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D EL G + + EDR G
Sbjct: 135 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRG 194
Query: 420 G 422
G
Sbjct: 195 G 195
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 77.0 bits (188), Expect = 2e-14
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDR 413
DLKD MR+ GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ G N+++ ED+
Sbjct: 125 DLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDK 182
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 76.3 bits (186), Expect = 3e-14
Identities = 35/64 (54%), Positives = 49/64 (76%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDRGG 419
DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED+ G
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPG 178
Query: 420 GMKR 431
+R
Sbjct: 179 SRRR 182
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 76.3 bits (186), Expect = 3e-14
Identities = 35/64 (54%), Positives = 49/64 (76%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDRGG 419
DLKD MR+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED+ G
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPG 178
Query: 420 GMKR 431
+R
Sbjct: 179 SRRR 182
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 67.0 bits (162), Expect = 2e-11
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDRGG 419
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE---- 178
Query: 420 GMKRNLEVAR 449
G KR+ +R
Sbjct: 179 GSKRHRSRSR 188
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 66.6 bits (161), Expect = 2e-11
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHEDRGG 419
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE---- 178
Query: 420 GMKRN 434
G KR+
Sbjct: 179 GSKRH 183
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 362
DLKD MR+ GEVTFADAH+ + N+GVVEF++ D+K AI+K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 56.2 bits (134), Expect = 3e-08
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 240 DLKDLMRKVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 410
DLKD+MRK GE TF DAH+ GVVEFS DM+ A+ +G + G + + ED
Sbjct: 113 DLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (MST156)
Length = 600
Score = 44.3 bits (103), Expect = 1e-04
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +3
Query: 243 LKDLMR-KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 407
+KDLMR KVGEVT F DA + GVVEF + +K A++ + Y+L G L + E
Sbjct: 116 IKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKE 175
Query: 408 DRGG 419
D G
Sbjct: 176 DPDG 179
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (MEF-2)
Length = 591
Score = 44.3 bits (103), Expect = 1e-04
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +3
Query: 243 LKDLMR-KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 407
+KDLMR KVGEVT F DA + GVVEF + +K A++ + Y+L G L + E
Sbjct: 107 IKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKE 166
Query: 408 DRGG 419
D G
Sbjct: 167 DPDG 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,855,205
Number of Sequences: 369166
Number of extensions: 1012385
Number of successful extensions: 1866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)