Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E07
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 64 3e-10
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 61 3e-09
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 60 6e-09
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 60 6e-09
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 54 3e-07
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 54 3e-07
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 46 1e-04
sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2 44 4e-04
sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (... 37 0.039
sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (... 37 0.039
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 64.3 bits (155), Expect = 3e-10
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
+ GEVT+ADAHK R N+GV+EF + SDMK A+DK DG E+ G N+++ ED
Sbjct: 132 QAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
+ GEVT+ADAHK R+N+GVVEF++ SDMK AI+K D EL G + + ED
Sbjct: 142 QAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVED 191
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 60.1 bits (144), Expect = 6e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 126 QAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 60.1 bits (144), Expect = 6e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
+ GEVT+ADAHK R+N+GV+EF + SDMK A++K DG E+ G +++ ED
Sbjct: 126 QAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 175
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 54.3 bits (129), Expect = 3e-07
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 147
+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 54.3 bits (129), Expect = 3e-07
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHE 147
+ GEVTFADAH+ + N+GVVEF++ D+K AI+K G E+ G +K+ E
Sbjct: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 45.8 bits (107), Expect = 1e-04
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDK 102
+ GEVTFADAH+ + N+GVVEF++ D+K AI+K
Sbjct: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 163
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
Length = 365
Score = 43.9 bits (102), Expect = 4e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 1 KVGEVTFADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
K GE TF DAH+ GVVEFS DM+ A+ +G + G + + ED
Sbjct: 120 KAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 (MyEF-2) (MST156)
Length = 600
Score = 37.4 bits (85), Expect = 0.039
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 1 KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
KVGEVT F DA + GVVEF + +K A++ + Y+L G L + ED
Sbjct: 123 KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKED 176
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 (MyEF-2) (MEF-2)
Length = 591
Score = 37.4 bits (85), Expect = 0.039
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 1 KVGEVT----FADAHKLRQNQGVVEFSNSSDMKAAIDKYDGYELYGYNLKVHED 150
KVGEVT F DA + GVVEF + +K A++ + Y+L G L + ED
Sbjct: 114 KVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKED 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.303 0.125 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,810,285
Number of Sequences: 369166
Number of extensions: 786148
Number of successful extensions: 1229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)