Planarian EST Database

DrC_00857

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00857 TTCTCATTATTAATATTATCAATTGTATCATGCTTTTATGCTGATGCTTTAATTGGACTA CTTGGAGGAGGAGGAGAAGAAGAGGTGGACTTTTAGGTGGAGTTTTGGGAGGAGGAGGAG GTAGAAGACATGGAGGAGGAGGTGGTCTTTTAGGTGGACTTCTAGGTGGACTTTTGGGAG GAAAAGGTGGAGTACTTGGTTTGGATAAATTACTATCAGGATTACCACTAACAAATATAG TTGGCGGTCTTTTGGATACACTCGAACAAACAATTCCACTCAATATATTTTCTACTGTAA AAAGTCTATTAAATGAAATTCTCGATTTGGTAAAGGATTTATTGAGATTGGAAAGTGATC CTGCTAAATTACAAAGAATTAGTAAATTATTGAACGATTTGAATAGAAAAGGATACAGTT TTGAGAAATTGAGAAAGAAATATTTTAGAGATGTAGATCTCAGTGCAGTTGTAAAAGCAA AAGTTGATGTGAACACTGACGAATAAATGTTATTCGAAACAATGTGATAATAACAATAAA GCATTATTAATC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00857
         (552 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58295|DPOL_METJA  DNA polymerase [Contains: Mja pol-1 in...    34   0.27 
sp|Q9P567|SUCB_NEUCR  Probable succinyl-CoA ligase [GDP-form...    31   1.8  
sp|Q8N3Y1|FBXW8_HUMAN  F-box/WD-repeat protein 8 (F-box and ...    31   1.8  
sp|P21249|ANT1_ONCVO  Major antigen (Myosin-like antigen)          31   2.3  
sp|P08987|GTFB_STRMU  Glucosyltransferase-I precursor (GTF-I...    30   3.0  
sp|Q9K8G8|SYV_BACHD  Valyl-tRNA synthetase (Valine--tRNA lig...    30   3.0  
sp|P13470|GTFC_STRMU  Glucosyltransferase-SI precursor (GTF-...    30   5.1  
sp|Q08204|SMC5_YEAST  Structural maintenance of chromosome 5       29   6.7  
sp|Q15814|TBCC_HUMAN  Tubulin-specific chaperone C (Tubulin-...    29   8.8  
sp|Q5HEQ1|RECX_STAAC  Regulatory protein recX >gi|27805680|s...    29   8.8

>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
          Length = 1634

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 315  EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 440
            +I + + DL+R   D  K   IS++L   N K +SF+K+ KK
Sbjct: 902  KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943

>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
           mitochondrial precursor (Succinyl-CoA synthetase, beta
           chain) (SCS-beta)
          Length = 447

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 234 NIVGGLLDTLEQTIPLNIFSTVKSLLNEILDL-VKDLLRLESDPAKLQRISKLLNDLNRK 410
           NI GG++      I   + +TVKSL     DL +  + RL+     ++   +L+ND   K
Sbjct: 360 NIFGGIVRC--DAIAHGLINTVKSL-----DLKIPIIARLQG--TNMEAARQLINDSGMK 410

Query: 411 GYSFEKLRKKYFRDVDLSAVVKAKVDVN 494
            +S + L+    + V LS VVK   D++
Sbjct: 411 IFSIDDLQSAAEKSVQLSKVVKMARDID 438

>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
           only protein 29)
          Length = 598

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 307 RLFTVENILSGIVCSSVSKRPPTIFVSGNPD 215
           RL  + N+L    C ++S  PP + VSGN D
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454

>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
          Length = 2022

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 228  LTNIVGGLLDTLEQ--TIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDL 401
            LTN +  L  T+ Q  TI   I   +   LNE   L  DL  L+   A+++   K++ND 
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733

Query: 402  NRKGYSFEKLRKKYFRDVDL 461
              K    EK+R    + ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751

>sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I) (Dextransucrase) (Sucrose
           6-glucosyltransferase)
          Length = 1476

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 228 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 407
           +TN +    D   +T  +  +S +++  +E+ DL++D+++ E +P             N 
Sbjct: 535 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINP-------------NV 581

Query: 408 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 497
            GYSF  E+++K +   + DL A  K     NT
Sbjct: 582 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 614

>sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
          Length = 880

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
 Frame = +3

Query: 225  PLTNIVGGLLDTLEQTIPLNIFSTVKSLLN--EILDLVKDLLRLESDPAKLQR-ISKLLN 395
            P T ++G  ++  E+++  N+ S V+  L    +LDL +++ RLE +  KL++ + ++  
Sbjct: 780  PSTLVMGTAIEKPEKSMS-NVLSGVELYLPLAGLLDLEEEIARLEKEENKLEKEVERVQK 838

Query: 396  DLNRKGY-------SFEKLRKKYFRDVDLSAVVKAKV 485
             L+ +G+         E+ RKK    ++  A V+A++
Sbjct: 839  KLSNQGFLAKAPEKVIEEERKKEADYLEKRAAVRARI 875

>sp|P13470|GTFC_STRMU Glucosyltransferase-SI precursor (GTF-SI) (Dextransucrase) (Sucrose
           6-glucosyltransferase)
          Length = 1455

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 228 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 407
           +TN +    D   +T  +  +S +++  +E+ DL+++++R E +P             N 
Sbjct: 561 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRNIIRAEINP-------------NV 607

Query: 408 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 497
            GYSF  E+++K +   + DL A  K     NT
Sbjct: 608 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 640

>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
          Length = 1093

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 231 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPA----KLQRISKLLND 398
           TN   G + + EQ I   I + + +L NE  D    L  L +  +    +L  ++   +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700

Query: 399 LNRKGYSFEKLRKKYFRDVDLSAVVKAKVD 488
           +NR+ +   ++RKKY         ++ K+D
Sbjct: 701 INREAHQLNEIRKKYTMRKSTIETLREKLD 730

>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
          Length = 346

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 288 FSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLND 398
           F+  ++ + E+L+  + + RLE   ++LQ + KL+ND
Sbjct: 64  FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100

>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
 sp|Q8NVU3|RECX_STAAW Regulatory protein recX
 sp|Q6G861|RECX_STAAS Regulatory protein recX
          Length = 272

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +3

Query: 252 LDTLEQTIPLNIFSTVKSLLNEIL--DLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFE 425
           ++T+   +    F+  +++L+++L  DL K   +      + + ISK +  L RKGY ++
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYKYD 253

Query: 426 KLRKK 440
           K++ K
Sbjct: 254 KIKAK 258

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,808,354
Number of Sequences: 369166
Number of extensions: 636007
Number of successful extensions: 2215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2215
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00857

Planaria EST Database

DrC_00857

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail