Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K19
(331 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.12
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 31 0.76
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 0.76
sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I... 30 1.3
sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA lig... 30 1.3
sp|P13470|GTFC_STRMU Glucosyltransferase-SI precursor (GTF-... 30 2.2
sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5 29 2.9
sp|Q58488|CBIO1_METJA Putative cobalt import ATP-binding pr... 29 2.9
sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-... 29 3.8
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 29 3.8
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 94 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 219
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 31.2 bits (69), Expect = 0.76
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 13 NIVGGLLDTLEQTIPLNIFSTVKSLLNEILDL-VKDLLRLESDPAKLQRISKLLNDLNRK 189
NI GG++ I + +TVKSL DL + + RL+ ++ +L+ND K
Sbjct: 360 NIFGGIVRC--DAIAHGLINTVKSL-----DLKIPIIARLQG--TNMEAARQLINDSGMK 410
Query: 190 GYSFEKLRKKYFRDVDLSAVVKAKVDVN 273
+S + L+ + V LS VVK D++
Sbjct: 411 IFSIDDLQSAAEKSVQLSKVVKMARDID 438
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 31.2 bits (69), Expect = 0.76
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +1
Query: 7 LTNIVGGLLDTLEQ--TIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDL 180
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 181 NRKGYSFEKLRKKYFRDVDLSAVVKAKVDVNTDE*ILFET 300
K EK+R + ++L K T E IL ET
Sbjct: 1734 --KYDELEKIRASLIKRIELLDEEK-----RTMENILHET 1766
>sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1476
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 7 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 186
+TN + D +T + +S +++ +E+ DL++D+++ E +P N
Sbjct: 535 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINP-------------NV 581
Query: 187 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 276
GYSF E+++K + + DL A K NT
Sbjct: 582 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 614
>sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 880
Score = 30.4 bits (67), Expect = 1.3
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Frame = +1
Query: 4 PLTNIVGGLLDTLEQTIPLNIFSTVKSLLN--EILDLVKDLLRLESDPAKLQR-ISKLLN 174
P T ++G ++ E+++ N+ S V+ L +LDL +++ RLE + KL++ + ++
Sbjct: 780 PSTLVMGTAIEKPEKSMS-NVLSGVELYLPLAGLLDLEEEIARLEKEENKLEKEVERVQK 838
Query: 175 DLNRKGY-------SFEKLRKKYFRDVDLSAVVKAKV 264
L+ +G+ E+ RKK ++ A V+A++
Sbjct: 839 KLSNQGFLAKAPEKVIEEERKKEADYLEKRAAVRARI 875
>sp|P13470|GTFC_STRMU Glucosyltransferase-SI precursor (GTF-SI) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1455
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 7 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 186
+TN + D +T + +S +++ +E+ DL+++++R E +P N
Sbjct: 561 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRNIIRAEINP-------------NV 607
Query: 187 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 276
GYSF E+++K + + DL A K NT
Sbjct: 608 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 640
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
Length = 1093
Score = 29.3 bits (64), Expect = 2.9
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 10 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPA----KLQRISKLLND 177
TN G + + EQ I I + + +L NE D L L + + +L ++ +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700
Query: 178 LNRKGYSFEKLRKKYFRDVDLSAVVKAKVD 267
+NR+ + ++RKKY ++ K+D
Sbjct: 701 INREAHQLNEIRKKYTMRKSTIETLREKLD 730
>sp|Q58488|CBIO1_METJA Putative cobalt import ATP-binding protein cbiO 1
Length = 279
Score = 29.3 bits (64), Expect = 2.9
Identities = 23/54 (42%), Positives = 26/54 (48%)
Frame = +1
Query: 136 DPAKLQRISKLLNDLNRKGYSFEKLRKKYFRDVDLSAVVKAKVDVNTDE*ILFE 297
DP +I KLL DLN+KG + DVDL V KV V D IL E
Sbjct: 171 DPVGASKIMKLLYDLNKKGMTIIIST----HDVDLVPVYADKVYVMYDGKILKE 220
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
Length = 346
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 67 FSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLND 177
F+ ++ + E+L+ + + RLE ++LQ + KL+ND
Sbjct: 64 FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 31 LDTLEQTIPLNIFSTVKSLLNEIL--DLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFE 204
++T+ + F+ +++L+++L DL K + + + ISK + L RKGY ++
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYKYD 253
Query: 205 KLRKK 219
K++ K
Sbjct: 254 KIKAK 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,526,916
Number of Sequences: 369166
Number of extensions: 534914
Number of successful extensions: 2007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)