Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_P03
(545 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 32 1.3
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 31 1.7
sp|Q9ZDQ2|RF2_RICPR Peptide chain release factor 2 (RF-2) 29 6.5
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 29 8.5
sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-... 29 8.5
sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor ... 29 8.5
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 29 8.5
sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA lig... 29 8.5
sp|Q8EVD7|Y627_MYCPE Hypothetical UPF0246 protein MYPE6270 29 8.5
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 307 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKFEKE 432
+I + + DL+R D K IS++L N K +SF+K K+
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 31.2 bits (69), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 299 RLFTVENILSGIVCSSVSKRPPTIFVSGNPD 207
RL + N+L C ++S PP + VSGN D
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|Q9ZDQ2|RF2_RICPR Peptide chain release factor 2 (RF-2)
Length = 369
Score = 29.3 bits (64), Expect = 6.5
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 271 LNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKFEKE 432
LN+F+ +KS L EIL+L + + +E+D L+ ++++ D + KFE E
Sbjct: 65 LNVFNKLKSNLKEILEL-EAMAEVEND---LETLNQIEQDFKKLSIITAKFETE 114
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 28.9 bits (63), Expect = 8.5
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 KSLLNEILDLVK-DLLRLESDPAKLQRISKLLNDLNRKGYSFEKFEKEIF 438
K +NEI + +K + ++ESD + SK LND+ ++ +EK EI+
Sbjct: 450 KKFINEIKEKIKIEKKKIESDKKSYEDRSKSLNDITKE---YEKLLNEIY 496
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
Length = 346
Score = 28.9 bits (63), Expect = 8.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 280 FSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLND 390
F+ ++ + E+L+ + + RLE ++LQ + KL+ND
Sbjct: 64 FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1630
Score = 28.9 bits (63), Expect = 8.5
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 KSLLNEILDLVK-DLLRLESDPAKLQRISKLLNDLNRKGYSFEKFEKEIF 438
K +NEI + +K + ++ESD + SK LND+ ++ +EK EI+
Sbjct: 441 KKFINEIKEKIKIEKKKIESDKKSYEDRSKSLNDITKE---YEKLLNEIY 487
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 241 LLDTLEQTIPLNIFSTVKSLLNEILDLVK 327
LLD L ++PL I+ST S+L+ +DL++
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
>sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 880
Score = 28.9 bits (63), Expect = 8.5
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +1
Query: 217 PLTNIVGGLLDTLEQTIPLNIFSTVKSLLN--EILDLVKDLLRLESDPAKLQR-ISKLLN 387
P T ++G ++ E+++ N+ S V+ L +LDL +++ RLE + KL++ + ++
Sbjct: 780 PSTLVMGTAIEKPEKSMS-NVLSGVELYLPLAGLLDLEEEIARLEKEENKLEKEVERVQK 838
Query: 388 DLNRKGYSFEKFEKEI 435
L+ +G+ + EK I
Sbjct: 839 KLSNQGFLAKAPEKVI 854
>sp|Q8EVD7|Y627_MYCPE Hypothetical UPF0246 protein MYPE6270
Length = 248
Score = 28.9 bits (63), Expect = 8.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 434 ISFSNFSKLYPFLFKSFNNLLILCNLAGSLSNLNKSFTKSRISFNRLFTVENI 276
I+ N+ LY F FK FN L N + NL S S++ N +F V N+
Sbjct: 133 INIPNYKNLYDFWFKEFNQKLEELNPDKLIINL-ASGEYSKLIDNSIFNVINV 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,545,427
Number of Sequences: 369166
Number of extensions: 637091
Number of successful extensions: 2122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2122
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)