Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_L19
(291 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.12
sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-... 29 3.8
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 29 3.8
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 29 3.8
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 28 5.0
sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor 28 5.0
sp|Q09733|YA4G_SCHPO Hypothetical protein C31A2.16 in chrom... 28 6.5
sp|P20929|NEBU_HUMAN Nebulin 28 6.5
sp|P51534|SHE4_YEAST Protein SHE4 28 6.5
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 28 6.5
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 58 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 183
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
Length = 346
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 31 FSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLND 141
F+ ++ + E+L+ + + RLE ++LQ + KL+ND
Sbjct: 64 FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 58 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKKYFRDVDLSAVVKAKVDV 234
E LD+V + LE D AKL++I++ + G + E+ K V AVVK + V
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAV 458
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 58 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKKY 186
+++++ ++LL++E K Q SK+++ LN GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 34 STVKSLLNEILDLVKDLLRLESDPAKL-QRISKLLNDLNRKGY 159
+T+ LNE++DL ++ +L D KL Q I+++ LN +G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor
Length = 107
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 KDLLRLESDPAKLQRISKLL-NDLNRKGYSFEKLRKKY 186
K L LE + A L+++ + L ND+ K EKLR+ Y
Sbjct: 42 KSLQMLEEEQALLEKVVETLSNDIEEKEEKIEKLRRSY 79
>sp|Q09733|YA4G_SCHPO Hypothetical protein C31A2.16 in chromosome I
Length = 1101
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 182 FFLNFSKLY--PFLFKSFNNLLILCNLAGSLSNLNKSFTKSRISF 54
+ +N +L PF ++F++L + NL L + N S KSR+SF
Sbjct: 686 YLINIKRLLLCPFSNRNFSSLDLYSNLIQHLLSANSSPRKSRLSF 730
>sp|P20929|NEBU_HUMAN Nebulin
Length = 6669
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 115 QRISKLLNDLNRKGYSFEKLRKKYFRDVDLSAVVKAKVD 231
Q +K L+DLN K EKL+ KY D +L ++AKV+
Sbjct: 1494 QHNTKQLSDLNYK-VEGEKLKHKYTIDPELPQFIQAKVN 1531
>sp|P51534|SHE4_YEAST Protein SHE4
Length = 789
Score = 28.1 bits (61), Expect = 6.5
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 13 TIPLNIFSTVKSLLNEILDLVKDL-LRLESDPAKLQRISKLLNDLNRKGYSFEKLRKKYF 189
+I L + + K E+ LVK+L LR+ D K S +L SF+K K
Sbjct: 149 SIILQLLNKFKYNFKEVRFLVKELILRISEDEVK----SMMLIIFAELQSSFQKDFDKAV 204
Query: 190 RDVDLSAVVKAKVDVNTD 243
D S +V+A++DV D
Sbjct: 205 VDFMSSLIVEAEIDVGND 222
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 31 FSTVKSLLNEIL--DLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 183
F+ +++L+++L DL K + + + ISK + L RKGY ++K++ K
Sbjct: 206 FTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYKYDKIKAK 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,885,803
Number of Sequences: 369166
Number of extensions: 403955
Number of successful extensions: 1552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)