Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B08
(390 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 32 0.58
sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein... 30 2.2
sp|Q9GLG7|CAN3_MACFA Calpain-3 (Calpain L3) (Calpain p94) (... 28 4.9
sp|Q92177|CAN3_CHICK Calpain-3 (Calpain L3) (Calpain p94) (... 28 6.4
sp|P51186|CAN3_BOVIN Calpain-3 (Calpain L3) (Calpain p94) (... 28 8.4
sp|Q28203|TNR5_BOVIN Tumor necrosis factor receptor superfa... 28 8.4
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 31.6 bits (70), Expect = 0.58
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 240 RLFTVENILSGIVCSSVSKRPPTIFVSGNPDSNL 139
RL + N+L C ++S PP + VSGN D +
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein (Protein 71-7A)
Length = 1012
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 252 NFINRLFTVENILSGIVCSSVSKRPPTIFVSGNPDSNL 139
+F+N F EN+L+ +V S ++ P +PDS+L
Sbjct: 588 DFLNNPFKQENVLARMVASRITNYPTAWVEGSSPDSDL 625
>sp|Q9GLG7|CAN3_MACFA Calpain-3 (Calpain L3) (Calpain p94) (Calcium-activated neutral
proteinase 3) (CANP 3) (Muscle-specific
calcium-activated neutral protease 3) (Cn94)
Length = 815
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 282 PISINPYQIENFINRLFTVENILSGIVCSSVS-KRP-PTIFVSGNPDSN 142
P + P+Q FI R+F+ + LS V +++S RP P IFVS +SN
Sbjct: 558 PSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVPIIFVSDRANSN 606
>sp|Q92177|CAN3_CHICK Calpain-3 (Calpain L3) (Calpain p94) (Calcium-activated neutral
proteinase 3) (CANP 3) (Muscle-specific
calcium-activated neutral protease 3)
Length = 810
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = -1
Query: 282 PISINPYQIENFINRLFT--------VENILSGIVCSSVSKRPPTIFVSGNPDSN 142
P + P+Q FI R+F+ VEN++ S K P IFVS +SN
Sbjct: 551 PSTYEPHQEGEFILRVFSEKRSLSEEVENMIEADRPSKKKKGKPIIFVSDRANSN 605
>sp|P51186|CAN3_BOVIN Calpain-3 (Calpain L3) (Calpain p94) (Calcium-activated neutral
proteinase 3) (CANP 3) (Muscle-specific
calcium-activated neutral protease 3) (nCL-1)
Length = 822
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -1
Query: 282 PISINPYQIENFINRLFTVENILSGIVCSSVS--------KRPPTIFVSGNPDSN 142
P + P+Q FI R+F+ + LS V +++S K P IFVS +SN
Sbjct: 559 PSTYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVKKKKNKPIIFVSDRANSN 613
>sp|Q28203|TNR5_BOVIN Tumor necrosis factor receptor superfamily member 5 precursor
(CD40L receptor) (B-cell surface antigen CD40)
Length = 269
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 170 IVGGLLDTLEQTIPLNIFSTVKSLLMKFSIW 262
I GLLDT+ + PL FS V S K W
Sbjct: 134 IATGLLDTVCEPCPLGFFSNVSSAFEKCHRW 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,876,744
Number of Sequences: 369166
Number of extensions: 495007
Number of successful extensions: 1165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)