Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I12
(527 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.25
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 32 1.2
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 31 1.6
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 2.1
sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I... 30 2.8
sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA lig... 30 2.8
sp|P13470|GTFC_STRMU Glucosyltransferase-SI precursor (GTF-... 30 4.7
sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5 29 6.1
sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-... 29 8.0
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 29 8.0
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.25
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 290 EILDLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFEKLRKK 415
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 282 RLFTVENILSGIVCSSVSKRPPTIFVSGNPDSNL 181
RL + N+L C ++S PP + VSGN D +
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 31.2 bits (69), Expect = 1.6
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 209 NIVGGLLDTLEQTIPLNIFSTVKSLLNEILDL-VKDLLRLESDPAKLQRISKLLNDLNRK 385
NI GG++ I + +TVKSL DL + + RL+ ++ +L+ND K
Sbjct: 360 NIFGGIVRC--DAIAHGLINTVKSL-----DLKIPIIARLQG--TNMEAARQLINDSGMK 410
Query: 386 GYSFEKLRKKYFRDVDLSAVVKAKVDVN 469
+S + L+ + V LS VVK D++
Sbjct: 411 IFSIDDLQSAAEKSVQLSKVVKMARDID 438
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 203 LTNIVGGLLDTLEQ--TIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDL 376
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 377 NRKGYSFEKLRKKYFRDVDL 436
K EK+R + ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751
>sp|P08987|GTFB_STRMU Glucosyltransferase-I precursor (GTF-I) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1476
Score = 30.4 bits (67), Expect = 2.8
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 203 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 382
+TN + D +T + +S +++ +E+ DL++D+++ E +P N
Sbjct: 535 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINP-------------NV 581
Query: 383 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 472
GYSF E+++K + + DL A K NT
Sbjct: 582 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 614
>sp|Q9K8G8|SYV_BACHD Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 880
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Frame = +2
Query: 200 PLTNIVGGLLDTLEQTIPLNIFSTVKSLLN--EILDLVKDLLRLESDPAKLQR-ISKLLN 370
P T ++G ++ E+++ N+ S V+ L +LDL +++ RLE + KL++ + ++
Sbjct: 780 PSTLVMGTAIEKPEKSMS-NVLSGVELYLPLAGLLDLEEEIARLEKEENKLEKEVERVQK 838
Query: 371 DLNRKGY-------SFEKLRKKYFRDVDLSAVVKAKV 460
L+ +G+ E+ RKK ++ A V+A++
Sbjct: 839 KLSNQGFLAKAPEKVIEEERKKEADYLEKRAAVRARI 875
>sp|P13470|GTFC_STRMU Glucosyltransferase-SI precursor (GTF-SI) (Dextransucrase) (Sucrose
6-glucosyltransferase)
Length = 1455
Score = 29.6 bits (65), Expect = 4.7
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 203 LTNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLNDLNR 382
+TN + D +T + +S +++ +E+ DL+++++R E +P N
Sbjct: 561 ITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRNIIRAEINP-------------NV 607
Query: 383 KGYSF--EKLRKKY-FRDVDLSAVVKAKVDVNT 472
GYSF E+++K + + DL A K NT
Sbjct: 608 VGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNT 640
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
Length = 1093
Score = 29.3 bits (64), Expect = 6.1
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 206 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLESDPA----KLQRISKLLND 373
TN G + + EQ I I + + +L NE D L L + + +L ++ +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700
Query: 374 LNRKGYSFEKLRKKYFRDVDLSAVVKAKVD 463
+NR+ + ++RKKY ++ K+D
Sbjct: 701 INREAHQLNEIRKKYTMRKSTIETLREKLD 730
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
Length = 346
Score = 28.9 bits (63), Expect = 8.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 263 FSTVKSLLNEILDLVKDLLRLESDPAKLQRISKLLND 373
F+ ++ + E+L+ + + RLE ++LQ + KL+ND
Sbjct: 64 FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 28.9 bits (63), Expect = 8.0
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 227 LDTLEQTIPLNIFSTVKSLLNEIL--DLVKDLLRLESDPAKLQRISKLLNDLNRKGYSFE 400
++T+ + F+ +++L+++L DL K + + + ISK + L RKGY ++
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYKYD 253
Query: 401 KLRKK 415
K++ K
Sbjct: 254 KIKAK 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,556,809
Number of Sequences: 369166
Number of extensions: 623822
Number of successful extensions: 2217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)