DrC_00694
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00694 (644 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 265 6e-71 sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 247 2e-65 sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 212 6e-55 sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 211 2e-54 sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 33 0.48 sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) 32 1.1 sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 31 2.4 sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 7.0 sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chrom... 30 7.0 sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kD... 30 7.0
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC) sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC) Length = 168 Score = 265 bits (678), Expect = 6e-71 Identities = 132/164 (80%), Positives = 149/164 (90%) Frame = +3 Query: 54 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 233 L+PYL+AVR +L+AALCL NF SQVVERHNKPEVE +SSKELLL P+ ISRN+KEKVLIE Sbjct: 5 LRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIE 64 Query: 234 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 413 GSINSVR+SI++KQ+DEIEK+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTE Sbjct: 65 GSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTE 124 Query: 414 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 545 QM KHKLVDF+I FME+IDKEISEM+L+VNARAR AEEFLK F Sbjct: 125 QMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC) Length = 169 Score = 247 bits (630), Expect = 2e-65 Identities = 119/165 (72%), Positives = 145/165 (87%) Frame = +3 Query: 54 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 233 L+PYL AVRH+L+AALCL F SQVVERHNKPEVE ++SKELL+TP+V++RN +E+VLIE Sbjct: 5 LQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIE 64 Query: 234 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 413 S+NSVR+SI+IKQSDEIEK+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE Sbjct: 65 PSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTE 124 Query: 414 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAFD 548 M KHKLVDF++ FM++IDKEISEM+L++NARAR AEEFLK F+ Sbjct: 125 AMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRFN 169
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) Length = 171 Score = 212 bits (540), Expect = 6e-55 Identities = 111/166 (66%), Positives = 133/166 (80%), Gaps = 1/166 (0%) Frame = +3 Query: 51 ALKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVET-KSSKELLLTPIVISRNDKEKVL 227 +L+PYL AVR+SLEAAL LSNF SQ VERHN+PEVE +S ELLL P+ ISRN+ E+VL Sbjct: 4 SLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVL 63 Query: 228 IEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVH 407 IE S+NSVR+S+ +KQ+DEIE++L HKFTRF+ RAE F ILRR P+ GY ISFLITN H Sbjct: 64 IEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKH 123 Query: 408 TEQMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 545 TE M KLVDFII FMED+DKEISE++L +NARAR AE +L F Sbjct: 124 TESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC) Length = 168 Score = 211 bits (536), Expect = 2e-54 Identities = 106/164 (64%), Positives = 130/164 (79%) Frame = +3 Query: 54 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 233 L+PYL AVR +L A+L L F S++VER ++PEVE S E+LL P+V+SRN++E+ LIE Sbjct: 5 LRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIE 64 Query: 234 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 413 S+NSVR SI IKQ DEIE++L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE Sbjct: 65 SSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTE 124 Query: 414 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 545 +MLKHKLVDFII FME++D EISEM+L +N RAR AE +L F Sbjct: 125 EMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 Length = 1594 Score = 33.5 bits (75), Expect = 0.48 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 9/172 (5%) Frame = +3 Query: 15 ILKNKGNRSY*MALKPYLAAVRHSLEAALCLSNFDSQ-------VVERHNKPEVETKSSK 173 +L+NK N A V+H EA +CL N Q ++ N E K S+ Sbjct: 905 VLQNKDNE---------FALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSR 955 Query: 174 ELLLTPI--VISRNDKEKVLIEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFV 347 E++L + + ND++ L+ + S+ S + D ++ +F + M + V Sbjct: 956 EIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVM---TDHRV 1012 Query: 348 ILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDKEISEMRLAVN 503 L + I I H E +++ +K++ E++L V+ Sbjct: 1013 SLEELKKENQQIINQIQESHAE-------------IIQEKEKQLQELKLKVS 1051
>sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) Length = 254 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +3 Query: 93 AALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSVRLSISIK 272 A + NFD ++VERH+ +V+ S LLL + ++E L+ G R I+ + Sbjct: 128 APVLYENFDIELVERHHNQKVDAPSGTALLLAHTIQDSLNEETKLLYG-----REGIAKR 182 Query: 273 QSDEI 287 + +EI Sbjct: 183 EKNEI 187
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component SWI1) (Transcription regulatory protein ADR6) (Regulatory protein GAM3) Length = 1314 Score = 31.2 bits (69), Expect = 2.4 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Frame = +3 Query: 108 SNFDSQVVERHNKPEVETKSSKELLLTPIVISRND---KEKVLIEGSINSVRLSISIK-- 272 +N Q V++ K V+ K+ KEL L R D +++ L+E +L + K Sbjct: 585 NNIGQQQVKKPRKQRVKKKTKKELELERK--EREDFQKRQQKLLEDQQRQQKLLLETKLR 642 Query: 273 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFL 392 Q EIE K + ++R + +I R K GYDI+++ Sbjct: 643 QQYEIELKKLPKVYKRSIVRNYKPLINRLKHYNGYDINYI 682
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal deoxynucleotidyltransferase) (TDT) (Terminal transferase) Length = 530 Score = 29.6 bits (65), Expect = 7.0 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +3 Query: 354 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 443 RR + G+D+ FLIT+ EQ L HK+ DF Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
>sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chromosome I Length = 611 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = -2 Query: 301 QSNFSISSDCLMDMLNLTELIEPSMRTFSLSFLLITIGVRSSS 173 Q+NF + ++C MD L+ T +I+ S+ F L+ L IGV SSS Sbjct: 379 QTNF-VRTNC-MDCLDRTNVIQTSIAQFILNMQLHDIGVLSSS 419
>sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1087 Score = 29.6 bits (65), Expect = 7.0 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Frame = +3 Query: 48 MALKPYLAAVRHSLEAALCLSNFDSQ---VVERHNK-PEVETK---SSKELLLTPIVISR 206 MAL +AA R LE C F + E K P + T S+E++ V+ + Sbjct: 388 MALDIEIAAYRKLLEGEECRIGFGPSPFSLTEGLPKIPSISTHIKVKSEEMIK---VVEK 444 Query: 207 NDKEKVLIEGSINSVRLSISIKQSDEIE 290 ++KE V++EG +R++ + + ++ E Sbjct: 445 SEKETVIVEGQTEEIRVTEGVTEEEDKE 472
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,611,323
Number of Sequences: 369166
Number of extensions: 992391
Number of successful extensions: 2638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2637
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
