Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C11
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 131 5e-31
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 120 2e-27
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 107 8e-24
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 100 2e-21
sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) 32 0.76
sp|Q7MK41|PNCB_VIBVY Nicotinate phosphoribosyltransferase (... 30 2.9
sp|Q8DA38|PNCB_VIBVU Nicotinate phosphoribosyltransferase (... 30 2.9
sp|O94466|RGA7_SCHPO Probable Rho-GTPase-activating protein 7 29 3.8
sp|O51363|SYP_BORBU Prolyl-tRNA synthetase (Proline--tRNA l... 29 3.8
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 29 5.0
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 131 bits (330), Expect = 5e-31
Identities = 76/145 (52%), Positives = 98/145 (67%), Gaps = 12/145 (8%)
Frame = +1
Query: 25 PYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGS 204
PYL+AVR +L+AALCL NF SQVVERHNKPEVE +SSKELLL P+ ISRN+KEKVLIEGS
Sbjct: 7 PYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGS 66
Query: 205 INSVRLSISITQSDELRRCFVIIY-RFMMMRAEES*LRRNSQIRYSSIL-----CHTDN- 363
INSVR+SI++ Q+DE+ + + RFMMMRAE + R + I HT+
Sbjct: 67 INSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQM 126
Query: 364 -----VSTIVDYIDMRYDRISEMRL 423
V ++ +++ ISEM+L
Sbjct: 127 YKHKLVDFVIHFMEEIDKEISEMKL 151
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 120 bits (300), Expect = 2e-27
Identities = 59/94 (62%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Frame = +1
Query: 22 EPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEG 201
+PYL AVRH+L+AALCL F SQVVERHNKPEVE ++SKELL+TP+V++RN +E+VLIE
Sbjct: 6 QPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEP 65
Query: 202 SINSVRLSISITQSDELRRCFVIIY-RFMMMRAE 300
S+NSVR+SI+I QSDE+ + + RFM RA+
Sbjct: 66 SVNSVRISIAIKQSDEIEKILCHKFTRFMCQRAD 99
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 107 bits (268), Expect = 8e-24
Identities = 69/146 (47%), Positives = 95/146 (65%), Gaps = 13/146 (8%)
Frame = +1
Query: 25 PYLAAVRHSLEAALCLSNFDSQVVERHNKPEVET-KSSKELLLTPIVISRNDKEKVLIEG 201
PYL AVR+SLEAAL LSNF SQ VERHN+PEVE +S ELLL P+ ISRN+ E+VLIE
Sbjct: 7 PYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEP 66
Query: 202 SINSVRLSISITQSDELRRCFVIIY-RFMMMRAEES*LRRNSQIRYSSILC-----HTDN 363
S+NSVR+S+ + Q+DE+ + V + RF+ RAE + R I SI HT++
Sbjct: 67 SVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTES 126
Query: 364 VST------IVDYIDMRYDRISEMRL 423
+ T I+++++ ISE++L
Sbjct: 127 MKTGKLVDFIIEFMEDVDKEISEIKL 152
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 99.8 bits (247), Expect = 2e-21
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Frame = +1
Query: 13 NGFEPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVL 192
N PYL AVR +L A+L L F S++VER ++PEVE S E+LL P+V+SRN++E+ L
Sbjct: 3 NTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCL 62
Query: 193 IEGSINSVRLSISITQSDELRRCFVIIY-RFMMMRAEES*LRRNSQIRYSSIL-----CH 354
IE S+NSVR SI I Q DE+ R V + +F+M RAE + R ++ I H
Sbjct: 63 IESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYH 122
Query: 355 TDN------VSTIVDYIDMRYDRISEMRL 423
T+ V I+++++ ISEM+L
Sbjct: 123 TEEMLKHKLVDFIIEFMEEVDAEISEMKL 151
>sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR)
Length = 254
Score = 31.6 bits (70), Expect = 0.76
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 58 AALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEG 201
A + NFD ++VERH+ +V+ S LLL + ++E L+ G
Sbjct: 128 APVLYENFDIELVERHHNQKVDAPSGTALLLAHTIQDSLNEETKLLYG 175
>sp|Q7MK41|PNCB_VIBVY Nicotinate phosphoribosyltransferase (NAPRTase)
Length = 437
Score = 29.6 bits (65), Expect = 2.9
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 271 IYRFMMMRAEES*LRRNSQIRYSSILCHTDNVSTIVDYIDMRYDRISEMR 420
+Y+ MM+A +Q+RY I+ DN+S +V+ + +R++E+R
Sbjct: 19 VYKINMMQAAYR-FYPQTQVRYELIVRSDDNLSDLVEEVREEINRLAELR 67
>sp|Q8DA38|PNCB_VIBVU Nicotinate phosphoribosyltransferase (NAPRTase)
Length = 437
Score = 29.6 bits (65), Expect = 2.9
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 271 IYRFMMMRAEES*LRRNSQIRYSSILCHTDNVSTIVDYIDMRYDRISEMR 420
+Y+ MM+A +Q+RY I+ DN+S +V+ + +R++E+R
Sbjct: 19 VYKINMMQAAYR-FYPQTQVRYELIVRSDDNLSDLVEEVREEINRLAELR 67
>sp|O94466|RGA7_SCHPO Probable Rho-GTPase-activating protein 7
Length = 695
Score = 29.3 bits (64), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 7 LLNGFEPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKE 141
++ E + HSL LS F QV+E H E + KS KE
Sbjct: 105 VITSMEIHEQLANHSLTLQKTLSAFSDQVIEFHKNAERKRKSIKE 149
>sp|O51363|SYP_BORBU Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
Length = 488
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +1
Query: 139 ELLLTPIVISRNDKEK-----VLIEGSINSVRLSISITQSDELRRCFVIIYRFMMMRAEE 303
++LL + ISR DK++ + ++ I+ V++ + + Q D +R F ++ +E
Sbjct: 354 DVLLNSVTISRRDKDRKFKYQISLDSLISKVKVELDLMQKDLFQRAL----NFRILNTKE 409
Query: 304 S*LRRNSQIRYSSILCHTDNVSTIV 378
+ R+S+ Y + + ++ S V
Sbjct: 410 --IFRSSKDSYETFKAYVNDYSGFV 432
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 28.9 bits (63), Expect = 5.0
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +1
Query: 34 AAVRHSLEAALCLSNFDSQ-------VVERHNKPEVETKSSKELLLTPI--VISRNDKEK 186
A V+H EA +CL N Q ++ N E K S+E++L + + ND++
Sbjct: 914 ALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKL 973
Query: 187 VLIEGSINSVRLS 225
L+ + S+ S
Sbjct: 974 QLLRAELQSLEQS 986
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,524,869
Number of Sequences: 369166
Number of extensions: 575473
Number of successful extensions: 1400
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)