Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D09
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 141 5e-34
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 127 6e-30
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 120 1e-27
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 110 1e-24
sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 2.2
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 141 bits (355), Expect = 5e-34
Identities = 69/84 (82%), Positives = 75/84 (89%)
Frame = +1
Query: 1 LLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDK 180
+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTEQM KHKLVDF+I FME+IDK
Sbjct: 85 ILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDK 144
Query: 181 EISEMRLAVNARARQCAEEFLKAF 252
EISEM+L+VNARAR AEEFLK F
Sbjct: 145 EISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 127 bits (320), Expect = 6e-30
Identities = 60/85 (70%), Positives = 72/85 (84%)
Frame = +1
Query: 1 LLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDK 180
+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE M KHKLVDF++ FM++IDK
Sbjct: 85 ILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLHFMQEIDK 144
Query: 181 EISEMRLAVNARARQCAEEFLKAFD 255
EISEM+L++NARAR AEEFLK F+
Sbjct: 145 EISEMKLSLNARARVSAEEFLKRFN 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 120 bits (300), Expect = 1e-27
Identities = 59/84 (70%), Positives = 68/84 (80%)
Frame = +1
Query: 1 LLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDK 180
+L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE+MLKHKLVDFII FME++D
Sbjct: 85 ILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDA 144
Query: 181 EISEMRLAVNARARQCAEEFLKAF 252
EISEM+L +N RAR AE +L F
Sbjct: 145 EISEMKLFLNGRARLVAETYLSCF 168
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 110 bits (275), Expect = 1e-24
Identities = 56/84 (66%), Positives = 64/84 (76%)
Frame = +1
Query: 1 LLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDK 180
+L HKFTRF+ RAE F ILRR P+ GY ISFLITN HTE M KLVDFII FMED+DK
Sbjct: 86 ILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMKTGKLVDFIIEFMEDVDK 145
Query: 181 EISEMRLAVNARARQCAEEFLKAF 252
EISE++L +NARAR AE +L F
Sbjct: 146 EISEIKLFLNARARFVAEAYLDEF 169
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal
deoxynucleotidyltransferase) (TDT) (Terminal
transferase)
Length = 530
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +1
Query: 61 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 150
RR + G+D+ FLIT+ EQ L HK+ DF
Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,130,671
Number of Sequences: 369166
Number of extensions: 527048
Number of successful extensions: 1276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)