Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J05
(372 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 153 1e-37
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 140 7e-34
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 129 2e-30
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 120 7e-28
sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 2.3
sp|O55111|DSG2_MOUSE Desmoglein-2 precursor 29 2.9
sp|P25655|NOT1_YEAST General negative regulator of transcri... 29 2.9
sp|O75691|DRIM_HUMAN Down-regulated in metastasis protein (... 28 6.6
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 153 bits (386), Expect = 1e-37
Identities = 75/91 (82%), Positives = 82/91 (90%)
Frame = +2
Query: 2 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIG 181
Q+DEIEK+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTEQM KHKLVDF+I
Sbjct: 78 QADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIH 137
Query: 182 FMEDIDKEISEMRLAVNARARQCAEEFLKAF 274
FME+IDKEISEM+L+VNARAR AEEFLK F
Sbjct: 138 FMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 140 bits (354), Expect = 7e-34
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = +2
Query: 2 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIG 181
QSDEIEK+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE M KHKLVDF++
Sbjct: 78 QSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLH 137
Query: 182 FMEDIDKEISEMRLAVNARARQCAEEFLKAFD 277
FM++IDKEISEM+L++NARAR AEEFLK F+
Sbjct: 138 FMQEIDKEISEMKLSLNARARVSAEEFLKRFN 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 129 bits (325), Expect = 2e-30
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +2
Query: 2 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIG 181
Q DEIE++L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE+MLKHKLVDFII
Sbjct: 78 QVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIE 137
Query: 182 FMEDIDKEISEMRLAVNARARQCAEEFLKAF 274
FME++D EISEM+L +N RAR AE +L F
Sbjct: 138 FMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 120 bits (302), Expect = 7e-28
Identities = 61/91 (67%), Positives = 71/91 (78%)
Frame = +2
Query: 2 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIG 181
Q+DEIE++L HKFTRF+ RAE F ILRR P+ GY ISFLITN HTE M KLVDFII
Sbjct: 79 QADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMKTGKLVDFIIE 138
Query: 182 FMEDIDKEISEMRLAVNARARQCAEEFLKAF 274
FMED+DKEISE++L +NARAR AE +L F
Sbjct: 139 FMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal
deoxynucleotidyltransferase) (TDT) (Terminal
transferase)
Length = 530
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 83 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 172
RR + G+D+ FLIT+ EQ L HK+ DF
Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
>sp|O55111|DSG2_MOUSE Desmoglein-2 precursor
Length = 1122
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 371 LAKINSKLLENKSINLLYKVTGK 303
+AKI+S L E K I + YK TGK
Sbjct: 75 IAKIHSDLAEEKGIKITYKYTGK 97
>sp|P25655|NOT1_YEAST General negative regulator of transcription subunit 1
Length = 2108
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -2
Query: 371 LAKINSKLLENKSINLLYKVTGKISIIINIPNRMPSGIPQHIVELEHSLP 222
L + SK + +++++YK G + +I+ I N MPS + ++ EL ++LP
Sbjct: 1789 LDQYTSKHAVSDAVSVVYK--GTLRVILGISNDMPSFLIENHYELMNNLP 1836
>sp|O75691|DRIM_HUMAN Down-regulated in metastasis protein (Key-1A6 protein) (Novel
nucleolar protein 73) (NNP73)
Length = 2785
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 8 DEIEKLLCHKFTRFMMMRAEEF----VILRRKPVQGYDISFLITNVHTEQMLKHK 160
+ ++ + H+ R + A++ V+L K +Q Y + + +T + E+MLKH+
Sbjct: 1576 ENMKHIQIHRRARALKKLAKQLMEGKVVLSSKSLQNYIMPYAMTPIFDEKMLKHE 1630
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,064,281
Number of Sequences: 369166
Number of extensions: 626179
Number of successful extensions: 1580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)