Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_H19
(551 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 253 2e-67
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 235 5e-62
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 199 3e-51
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 199 4e-51
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 32 1.4
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 31 2.3
sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 5.1
sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chrom... 30 5.1
sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) 29 6.7
sp|O28305|HEM2_ARCFU Delta-aminolevulinic acid dehydratase ... 29 8.8
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 253 bits (646), Expect = 2e-67
Identities = 127/159 (79%), Positives = 143/159 (89%)
Frame = +3
Query: 3 AAVRHSLEAALCLSNCDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINS 182
+AVR +L+AALCL N SQVVERHNKPEVE +SSKELLL P+ ISRN+KEKVLIEGSINS
Sbjct: 10 SAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINS 69
Query: 183 VRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKH 362
VR+SI++KQ+DEIEK+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTEQM KH
Sbjct: 70 VRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKH 129
Query: 363 KLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 479
KLVDF+I FME+IDKEISEM+L+VNARAR AEEFLK F
Sbjct: 130 KLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 235 bits (600), Expect = 5e-62
Identities = 114/159 (71%), Positives = 139/159 (87%)
Frame = +3
Query: 6 AVRHSLEAALCLSNCDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSV 185
AVRH+L+AALCL SQVVERHNKPEVE ++SKELL+TP+V++RN +E+VLIE S+NSV
Sbjct: 11 AVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEPSVNSV 70
Query: 186 RLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHK 365
R+SI+IKQSDEIEK+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE M KHK
Sbjct: 71 RISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHK 130
Query: 366 LVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAFD 482
LVDF++ FM++IDKEISEM+L++NARAR AEEFLK F+
Sbjct: 131 LVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRFN 169
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 199 bits (507), Expect = 3e-51
Identities = 106/159 (66%), Positives = 126/159 (79%), Gaps = 1/159 (0%)
Frame = +3
Query: 6 AVRHSLEAALCLSNCDSQVVERHNKPEVET-KSSKELLLTPIVISRNDKEKVLIEGSINS 182
AVR+SLEAAL LSN SQ VERHN+PEVE +S ELLL P+ ISRN+ E+VLIE S+NS
Sbjct: 11 AVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEPSVNS 70
Query: 183 VRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKH 362
VR+S+ +KQ+DEIE++L HKFTRF+ RAE F ILRR P+ GY ISFLITN HTE M
Sbjct: 71 VRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMKTG 130
Query: 363 KLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 479
KLVDFII FMED+DKEISE++L +NARAR AE +L F
Sbjct: 131 KLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 199 bits (506), Expect = 4e-51
Identities = 101/158 (63%), Positives = 124/158 (78%)
Frame = +3
Query: 6 AVRHSLEAALCLSNCDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSV 185
AVR +L A+L L S++VER ++PEVE S E+LL P+V+SRN++E+ LIE S+NSV
Sbjct: 11 AVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSV 70
Query: 186 RLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLKHK 365
R SI IKQ DEIE++L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE+MLKHK
Sbjct: 71 RFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHK 130
Query: 366 LVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 479
LVDFII FME++D EISEM+L +N RAR AE +L F
Sbjct: 131 LVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 31.6 bits (70), Expect = 1.4
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Frame = +3
Query: 3 AAVRHSLEAALCLSNCDSQ-------VVERHNKPEVETKSSKELLLTPI--VISRNDKEK 155
A V+H EA +CL N Q ++ N E K S+E++L + + ND++
Sbjct: 914 ALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKL 973
Query: 156 VLIEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITN 335
L+ + S+ S + D ++ +F + M + V L + I I
Sbjct: 974 QLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVM---TDHRVSLEELKKENQQIINQIQE 1030
Query: 336 VHTEQMLKHKLVDFIIGFMEDIDKEISEMRLAVN 437
H E +++ +K++ E++L V+
Sbjct: 1031 SHAE-------------IIQEKEKQLQELKLKVS 1051
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 30.8 bits (68), Expect = 2.3
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +3
Query: 42 SNCDSQVVERHNKPEVETKSSKELLLTPIVISRND---KEKVLIEGSINSVRLSISIK-- 206
+N Q V++ K V+ K+ KEL L R D +++ L+E +L + K
Sbjct: 585 NNIGQQQVKKPRKQRVKKKTKKELELERK--EREDFQKRQQKLLEDQQRQQKLLLETKLR 642
Query: 207 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFL 326
Q EIE K + ++R + +I R K GYDI+++
Sbjct: 643 QQYEIELKKLPKVYKRSIVRNYKPLINRLKHYNGYDINYI 682
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal
deoxynucleotidyltransferase) (TDT) (Terminal
transferase)
Length = 530
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 288 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 377
RR + G+D+ FLIT+ EQ L HK+ DF
Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
>sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chromosome I
Length = 611
Score = 29.6 bits (65), Expect = 5.1
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 235 QSNFSISSDCLMDMLNLTELIEPSMRTFSLSFLLITIGVRSSS 107
Q+NF + ++C MD L+ T +I+ S+ F L+ L IGV SSS
Sbjct: 379 QTNF-VRTNC-MDCLDRTNVIQTSIAQFILNMQLHDIGVLSSS 419
>sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR)
Length = 254
Score = 29.3 bits (64), Expect = 6.7
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 27 AALCLSNCDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSVRLSISIK 206
A + N D ++VERH+ +V+ S LLL + ++E L+ G R I+ +
Sbjct: 128 APVLYENFDIELVERHHNQKVDAPSGTALLLAHTIQDSLNEETKLLYG-----REGIAKR 182
Query: 207 QSDEI 221
+ +EI
Sbjct: 183 EKNEI 187
>sp|O28305|HEM2_ARCFU Delta-aminolevulinic acid dehydratase (Porphobilinogen synthase)
(ALAD) (ALADH)
Length = 322
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 90 ETKSSKELLLTPIVISRNDKEKVLIEGSINSVRLSISIKQSDEIEKLLCHKFTRFMM 260
E + S E L+TPI + N KEK IE + R+ + + E+E+ L F++
Sbjct: 23 EARLSPENLITPIFVDENIKEKKPIESMPDYFRIPLEMVDK-EVEECLEKDLRSFIL 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,058,256
Number of Sequences: 369166
Number of extensions: 845518
Number of successful extensions: 2250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2249
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)