Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D04
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 265 5e-71
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 247 2e-65
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 212 5e-55
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 211 1e-54
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 33 0.43
sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) 32 0.95
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 31 2.1
sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 6.2
sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chrom... 30 6.2
sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kD... 30 6.2
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 265 bits (678), Expect = 5e-71
Identities = 132/164 (80%), Positives = 149/164 (90%)
Frame = +2
Query: 44 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 223
L+PYL+AVR +L+AALCL NF SQVVERHNKPEVE +SSKELLL P+ ISRN+KEKVLIE
Sbjct: 5 LRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIE 64
Query: 224 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 403
GSINSVR+SI++KQ+DEIEK+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTE
Sbjct: 65 GSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTE 124
Query: 404 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 535
QM KHKLVDF+I FME+IDKEISEM+L+VNARAR AEEFLK F
Sbjct: 125 QMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 247 bits (630), Expect = 2e-65
Identities = 119/165 (72%), Positives = 145/165 (87%)
Frame = +2
Query: 44 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 223
L+PYL AVRH+L+AALCL F SQVVERHNKPEVE ++SKELL+TP+V++RN +E+VLIE
Sbjct: 5 LQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIE 64
Query: 224 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 403
S+NSVR+SI+IKQSDEIEK+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE
Sbjct: 65 PSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTE 124
Query: 404 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAFD 538
M KHKLVDF++ FM++IDKEISEM+L++NARAR AEEFLK F+
Sbjct: 125 AMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRFN 169
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 212 bits (540), Expect = 5e-55
Identities = 111/166 (66%), Positives = 133/166 (80%), Gaps = 1/166 (0%)
Frame = +2
Query: 41 ALKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVET-KSSKELLLTPIVISRNDKEKVL 217
+L+PYL AVR+SLEAAL LSNF SQ VERHN+PEVE +S ELLL P+ ISRN+ E+VL
Sbjct: 4 SLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVL 63
Query: 218 IEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVH 397
IE S+NSVR+S+ +KQ+DEIE++L HKFTRF+ RAE F ILRR P+ GY ISFLITN H
Sbjct: 64 IEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKH 123
Query: 398 TEQMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 535
TE M KLVDFII FMED+DKEISE++L +NARAR AE +L F
Sbjct: 124 TESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 211 bits (536), Expect = 1e-54
Identities = 106/164 (64%), Positives = 130/164 (79%)
Frame = +2
Query: 44 LKPYLAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIE 223
L+PYL AVR +L A+L L F S++VER ++PEVE S E+LL P+V+SRN++E+ LIE
Sbjct: 5 LRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIE 64
Query: 224 GSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTE 403
S+NSVR SI IKQ DEIE++L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE
Sbjct: 65 SSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTE 124
Query: 404 QMLKHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 535
+MLKHKLVDFII FME++D EISEM+L +N RAR AE +L F
Sbjct: 125 EMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 33.5 bits (75), Expect = 0.43
Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 9/172 (5%)
Frame = +2
Query: 5 ILKNKGNRSY*MALKPYLAAVRHSLEAALCLSNFDSQ-------VVERHNKPEVETKSSK 163
+L+NK N A V+H EA +CL N Q ++ N E K S+
Sbjct: 905 VLQNKDNE---------FALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSR 955
Query: 164 ELLLTPI--VISRNDKEKVLIEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFV 337
E++L + + ND++ L+ + S+ S + D ++ +F + M + V
Sbjct: 956 EIVLEDLKKLHVENDEKLQLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVM---TDHRV 1012
Query: 338 ILRRKPVQGYDISFLITNVHTEQMLKHKLVDFIIGFMEDIDKEISEMRLAVN 493
L + I I H E +++ +K++ E++L V+
Sbjct: 1013 SLEELKKENQQIINQIQESHAE-------------IIQEKEKQLQELKLKVS 1051
>sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR)
Length = 254
Score = 32.3 bits (72), Expect = 0.95
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 83 AALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSVRLSISIK 262
A + NFD ++VERH+ +V+ S LLL + ++E L+ G R I+ +
Sbjct: 128 APVLYENFDIELVERHHNQKVDAPSGTALLLAHTIQDSLNEETKLLYG-----REGIAKR 182
Query: 263 QSDEI 277
+ +EI
Sbjct: 183 EKNEI 187
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 31.2 bits (69), Expect = 2.1
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +2
Query: 98 SNFDSQVVERHNKPEVETKSSKELLLTPIVISRND---KEKVLIEGSINSVRLSISIK-- 262
+N Q V++ K V+ K+ KEL L R D +++ L+E +L + K
Sbjct: 585 NNIGQQQVKKPRKQRVKKKTKKELELERK--EREDFQKRQQKLLEDQQRQQKLLLETKLR 642
Query: 263 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFL 382
Q EIE K + ++R + +I R K GYDI+++
Sbjct: 643 QQYEIELKKLPKVYKRSIVRNYKPLINRLKHYNGYDINYI 682
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal
deoxynucleotidyltransferase) (TDT) (Terminal
transferase)
Length = 530
Score = 29.6 bits (65), Expect = 6.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 344 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 433
RR + G+D+ FLIT+ EQ L HK+ DF
Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
>sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chromosome I
Length = 611
Score = 29.6 bits (65), Expect = 6.2
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 291 QSNFSISSDCLMDMLNLTELIEPSMRTFSLSFLLITIGVRSSS 163
Q+NF + ++C MD L+ T +I+ S+ F L+ L IGV SSS
Sbjct: 379 QTNF-VRTNC-MDCLDRTNVIQTSIAQFILNMQLHDIGVLSSS 419
>sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kDa neurofilament protein)
(Neurofilament heavy polypeptide) (NF-H)
Length = 1087
Score = 29.6 bits (65), Expect = 6.2
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +2
Query: 38 MALKPYLAAVRHSLEAALCLSNFDSQ---VVERHNK-PEVETK---SSKELLLTPIVISR 196
MAL +AA R LE C F + E K P + T S+E++ V+ +
Sbjct: 388 MALDIEIAAYRKLLEGEECRIGFGPSPFSLTEGLPKIPSISTHIKVKSEEMIK---VVEK 444
Query: 197 NDKEKVLIEGSINSVRLSISIKQSDEIE 280
++KE V++EG +R++ + + ++ E
Sbjct: 445 SEKETVIVEGQTEEIRVTEGVTEEEDKE 472
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,941,328
Number of Sequences: 369166
Number of extensions: 953298
Number of successful extensions: 2422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2421
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)