Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N05
(552 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex sub... 258 9e-69
sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 co... 239 3e-63
sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC) 204 1e-52
sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subuni... 203 3e-52
sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR) 32 0.79
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 32 1.0
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 31 1.8
sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal... 30 5.1
sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chrom... 30 5.1
sp|O94466|RGA7_SCHPO Probable Rho-GTPase-activating protein 7 29 6.7
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa
subunit) (p20-ARC)
Length = 168
Score = 258 bits (658), Expect = 9e-69
Identities = 129/160 (80%), Positives = 145/160 (90%)
Frame = +1
Query: 1 LAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSIN 180
L+AVR +L+AALCL NF SQVVERHNKPEVE +SSKELLL P+ ISRN+KEKVLIEGSIN
Sbjct: 9 LSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSIN 68
Query: 181 SVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLK 360
SVR+SI++KQ+DEIEK+LCHKF RFMMMRAE F ILRRKPV+GYDISFLITN HTEQM K
Sbjct: 69 SVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYK 128
Query: 361 HKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 480
HKLVDF+I FME+IDKEISEM+L+VNARAR AEEFLK F
Sbjct: 129 HKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4 (ARP2/3
complex 20 kDa subunit) (p20-ARC)
Length = 169
Score = 239 bits (611), Expect = 3e-63
Identities = 116/161 (72%), Positives = 141/161 (87%)
Frame = +1
Query: 1 LAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSIN 180
L AVRH+L+AALCL F SQVVERHNKPEVE ++SKELL+TP+V++RN +E+VLIE S+N
Sbjct: 9 LEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQERVLIEPSVN 68
Query: 181 SVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLK 360
SVR+SI+IKQSDEIEK+LCHKFTRFM RA+ F +LRRKP+ GYDISFLIT HTE M K
Sbjct: 69 SVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFK 128
Query: 361 HKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAFD 483
HKLVDF++ FM++IDKEISEM+L++NARAR AEEFLK F+
Sbjct: 129 HKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRFN 169
>sp|P33204|ARPC4_YEAST ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 171
Score = 204 bits (519), Expect = 1e-52
Identities = 108/161 (67%), Positives = 128/161 (79%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LAAVRHSLEAALCLSNFDSQVVERHNKPEVET-KSSKELLLTPIVISRNDKEKVLIEGSI 177
L AVR+SLEAAL LSNF SQ VERHN+PEVE +S ELLL P+ ISRN+ E+VLIE S+
Sbjct: 9 LTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENEQVLIEPSV 68
Query: 178 NSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQML 357
NSVR+S+ +KQ+DEIE++L HKFTRF+ RAE F ILRR P+ GY ISFLITN HTE M
Sbjct: 69 NSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLITNKHTESMK 128
Query: 358 KHKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 480
KLVDFII FMED+DKEISE++L +NARAR AE +L F
Sbjct: 129 TGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEF 169
>sp|Q92352|ARPC4_SCHPO Probable ARP2/3 complex 20 kDa subunit (p20-ARC)
Length = 168
Score = 203 bits (516), Expect = 3e-52
Identities = 103/160 (64%), Positives = 126/160 (78%)
Frame = +1
Query: 1 LAAVRHSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSIN 180
L AVR +L A+L L F S++VER ++PEVE S E+LL P+V+SRN++E+ LIE S+N
Sbjct: 9 LNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVN 68
Query: 181 SVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITNVHTEQMLK 360
SVR SI IKQ DEIE++L KF +F+M RAE F ILRRKPVQGYDISFLITN HTE+MLK
Sbjct: 69 SVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLK 128
Query: 361 HKLVDFIIGFMEDIDKEISEMRLAVNARARQCAEEFLKAF 480
HKLVDFII FME++D EISEM+L +N RAR AE +L F
Sbjct: 129 HKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|Q8XJ55|DAPB_CLOPE Dihydrodipicolinate reductase (DHPR)
Length = 254
Score = 32.3 bits (72), Expect = 0.79
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 28 AALCLSNFDSQVVERHNKPEVETKSSKELLLTPIVISRNDKEKVLIEGSINSVRLSISIK 207
A + NFD ++VERH+ +V+ S LLL + ++E L+ G R I+ +
Sbjct: 128 APVLYENFDIELVERHHNQKVDAPSGTALLLAHTIQDSLNEETKLLYG-----REGIAKR 182
Query: 208 QSDEI 222
+ +EI
Sbjct: 183 EKNEI 187
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 32.0 bits (71), Expect = 1.0
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Frame = +1
Query: 4 AAVRHSLEAALCLSNFDSQ-------VVERHNKPEVETKSSKELLLTPI--VISRNDKEK 156
A V+H EA +CL N Q ++ N E K S+E++L + + ND++
Sbjct: 914 ALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKL 973
Query: 157 VLIEGSINSVRLSISIKQSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFLITN 336
L+ + S+ S + D ++ +F + M + V L + I I
Sbjct: 974 QLLRAELQSLEQSHLKELEDTLQVRHIQEFEKVM---TDHRVSLEELKKENQQIINQIQE 1030
Query: 337 VHTEQMLKHKLVDFIIGFMEDIDKEISEMRLAVN 438
H E +++ +K++ E++L V+
Sbjct: 1031 SHAE-------------IIQEKEKQLQELKLKVS 1051
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 31.2 bits (69), Expect = 1.8
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Frame = +1
Query: 43 SNFDSQVVERHNKPEVETKSSKELLLTPIVISRND---KEKVLIEGSINSVRLSISIK-- 207
+N Q V++ K V+ K+ KEL L R D +++ L+E +L + K
Sbjct: 585 NNIGQQQVKKPRKQRVKKKTKKELELERK--EREDFQKRQQKLLEDQQRQQKLLLETKLR 642
Query: 208 QSDEIEKLLCHKFTRFMMMRAEEFVILRRKPVQGYDISFL 327
Q EIE K + ++R + +I R K GYDI+++
Sbjct: 643 QQYEIELKKLPKVYKRSIVRNYKPLINRLKHYNGYDINYI 682
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase (Terminal addition enzyme) (Terminal
deoxynucleotidyltransferase) (TDT) (Terminal
transferase)
Length = 530
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +1
Query: 289 RRKPVQGYDISFLITNVHT----EQMLKHKLVDF 378
RR + G+D+ FLIT+ EQ L HK+ DF
Sbjct: 335 RRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDF 368
>sp|O14127|YF51_SCHPO Hypothetical protein C3C7.01c in chromosome I
Length = 611
Score = 29.6 bits (65), Expect = 5.1
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 236 QSNFSISSDCLMDMLNLTELIEPSMRTFSLSFLLITIGVRSSS 108
Q+NF + ++C MD L+ T +I+ S+ F L+ L IGV SSS
Sbjct: 379 QTNF-VRTNC-MDCLDRTNVIQTSIAQFILNMQLHDIGVLSSS 419
>sp|O94466|RGA7_SCHPO Probable Rho-GTPase-activating protein 7
Length = 695
Score = 29.3 bits (64), Expect = 6.7
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 16 HSLEAALCLSNFDSQVVERHNKPEVETKSSKELLLTP-----IVISRNDKEKVLIEGSIN 180
HSL LS F QV+E H E + KS KE + + DK K +G+
Sbjct: 118 HSLTLQKTLSAFSDQVIEFHKNAERKRKSIKEYAKKQENAYLEAVMQMDKSKSRFKGAET 177
Query: 181 SVRLSISIKQSDEIEK 228
++ K + + +K
Sbjct: 178 EYNRALDNKNTGDSQK 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,046,780
Number of Sequences: 369166
Number of extensions: 848550
Number of successful extensions: 2218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2217
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)