Planarian EST Database

DrC_00633

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00633 TAATGTCTCTAACAAGAGTTGTTGAAGTTCCAGAATTAGAAGTAGAAGTTAGTAAATTGA TCAATCGAATGCTTCATCTTTGTCAAGGATATCGACAAGTTGAAATAAGATGTTTGACTG ATGAAGTGAATTTGATGTCTTTCGGAAGACTTTTTGAACTTATTCGTCAACTTGAAGGAA GATATACTGAAGAACTTATTCGATTTCAAGTGAATCGAGGACAAAAAGTTACTTGGTATG ACGTGAAACCAGTAGAACATATTGAGACTCCGAAACCATTTGAAATGTTTCAAACAATTT TGAATTTGGAAAAAGATGTCCATCAAAATACCTTGAGATTGTGTAAATTAGCATGTGAGA AACTCGATGTTGATTTGACTTCATTCTTGAAAGACCGAGTAATTTTGAGACAAATAAAAG TAATTCGTAAAAGAGCAAGTCAACTGAGAAATTTAAGAAGAAGTGGAGATGATGTAACCC CATTTTTAACAAGTAGTTTACATGCTCGACACGAAATCAAAAAATTGGAAAGTCGCCTTC GTTTGGAAGTAGATAGAAGAGAATGGAGAAGACATGACGATGAAGAACCCGAAGAAATAA GAATGATTGGTTCTACTTCACGATTTTAAATCATTAATTTGAATGATTTAGAATTCTTTT TTCTCGTTTGAAATAAAAATTATTGAACTTTTTCATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00633
         (697 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42577|FRIS_LYMST  Soma ferritin                                69   2e-11
sp|P17663|FRIH1_XENLA  Ferritin heavy chain 1                      69   2e-11
sp|P49947|FRIM_SALSA  Ferritin, middle subunit (Ferritin M)        69   2e-11
sp|P49948|FRIH2_XENLA  Ferritin heavy chain 2 (XL2-17)             68   2e-11
sp|P07798|FRI2_RANCA  Ferritin, middle subunit (Ferritin M) ...    67   6e-11
sp|P07229|FRI1_RANCA  Ferritin, higher subunit (Ferritin H)        66   1e-10
sp|Q7SXA5|FRIL_XENLA  Ferritin light chain, oocyte isoform (...    66   1e-10
sp|P25915|FRIH_RABIT  Ferritin heavy chain (Ferritin H subunit)    65   2e-10
sp|P08267|FRIH_CHICK  Ferritin heavy chain (Ferritin H subunit)    65   2e-10
sp|P29389|FRIH_CRIGR  Ferritin heavy chain (Ferritin H subunit)    64   4e-10

>sp|P42577|FRIS_LYMST Soma ferritin
          Length = 174

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 40/146 (27%), Positives = 72/146 (49%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++ IN  L+    Y+ +      D+V L  F + F+   + E  + E+L+++Q  RG ++
Sbjct: 19  NRQINMELYASYSYQSMAYYFDRDDVALPGFHKFFKHQSEEEREHAEKLMKYQNKRGGRI 78

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  +  E     E  Q  L LEK V+Q+ L L KL     D  +  FL+   +  
Sbjct: 79  VLQDIKKPDRDEWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDAQMADFLESEFLEE 138

Query: 411 QIKVIRKRASQLRNLRRSGDDVTPFL 488
           Q+K I++ +  + NL+R G  +  ++
Sbjct: 139 QVKSIKELSDYITNLKRVGPGLGEYI 164

>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
          Length = 176

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 40/139 (28%), Positives = 68/139 (48%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++++N  ++    Y  +      D+V L    + F+     E  + E+ +++Q  RG +V
Sbjct: 18  NRMVNLEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRV 77

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  E  E     E  Q  L LEK V+Q  L L KLA +K+D  L  FL+   +  
Sbjct: 78  VLQDIKKPERDEWSNTLEAMQAALQLEKTVNQALLDLHKLASDKVDPQLCDFLESEYLEE 137

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K +++    + NL+R G
Sbjct: 138 QVKAMKELGDYITNLKRLG 156

>sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M)
          Length = 176

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 44/156 (28%), Positives = 74/156 (47%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           +++IN  +     Y  +      D+V L  F   F+   + E  + ++L+ FQ  RG ++
Sbjct: 18  NRMINMEMFASYTYTSMAFYFSRDDVALPGFAHFFKENSEEEREHADKLLSFQNKRGGRI 77

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  E  E     E  Q  L LEK+V+Q  L L K+A +K+D  L  FL+   +  
Sbjct: 78  LLQDIKKPERDEWGNGLEAMQCALQLEKNVNQALLDLHKIASDKVDPHLCDFLETHYLNE 137

Query: 411 QIKVIRKRASQLRNLRRSGDDVTPFLTSSLHARHEI 518
           Q++ I+K    + NL +  D V   +   L  +H +
Sbjct: 138 QVEAIKKLGDHITNLTKM-DAVKNKMAEYLFDKHTL 172

>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
          Length = 176

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 40/139 (28%), Positives = 68/139 (48%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++++N  ++    Y  +      D+V L    + F+     E  + E+ +++Q  RG +V
Sbjct: 18  NRMVNMEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRV 77

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  E  E     E  Q  L LEK V+Q  L L KLA +K+D  L  FL+   +  
Sbjct: 78  VLQDIKKPERDEWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAHLCDFLESEYLEE 137

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K +++    + NL+R G
Sbjct: 138 QVKAMKQLGDYITNLKRLG 156

>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
          Length = 176

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 42/139 (30%), Positives = 68/139 (48%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++++N  L+    Y  +      D+V L +    F+     E  + E+ +++Q  RG +V
Sbjct: 18  NRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRV 77

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  E  E     E  Q  L LEK V+Q  L L KLA +K+D  L  FL+   +  
Sbjct: 78  VLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEE 137

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K I++    + NL+R G
Sbjct: 138 QVKDIKRIGDFITNLKRLG 156

>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
          Length = 176

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 40/139 (28%), Positives = 68/139 (48%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++++N  L+    Y  +      D++ L +  + F+     E  + E+L++ Q  RG ++
Sbjct: 18  NRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRI 77

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              DVK  E  E     E  Q  L LEK V+Q  L L K+  +K+D  L  FL+   +  
Sbjct: 78  VLQDVKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYLEE 137

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K I++    + NL+R G
Sbjct: 138 QVKSIKQLGDYITNLKRLG 156

>sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (B-ferritin) (XeBF) (GV-LCH)
          Length = 177

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 35/114 (30%), Positives = 60/114 (52%)
 Frame = +3

Query: 120 DEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTI 299
           D+V L  F + F  + + +  + E+ ++FQ  RG +V   DVK  +  E     +  +  
Sbjct: 43  DDVALSKFSKFFRELSEKKRDHAEDFLKFQNKRGGRVVLQDVKKPDDDEWGNGTKAMEVA 102

Query: 300 LNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILRQIKVIRKRASQLRNLRR 461
           LNLEK ++Q  L L K+A +  D  +  +L+   +  ++K+I+K    L NLRR
Sbjct: 103 LNLEKSINQAVLDLHKIATDHTDPHMQDYLEHEFLEEEVKLIKKLGDHLTNLRR 156

>sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit)
          Length = 164

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 40/139 (28%), Positives = 69/139 (49%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++ IN  L+    Y  +      D+V L +F + F      E  + E+L++ Q  RG ++
Sbjct: 3   NRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRI 62

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  E+ +        +  L+LEK V+Q+ L L KLA +K D  L  F++   +  
Sbjct: 63  FLQDIKKPEYDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLNE 122

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K I++    + NLR+ G
Sbjct: 123 QVKSIKELGDHVTNLRKMG 141

>sp|P08267|FRIH_CHICK Ferritin heavy chain (Ferritin H subunit)
          Length = 180

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 40/139 (28%), Positives = 69/139 (49%)
 Frame = +3

Query: 51  SKLINRMLHLCQGYRQVEIRCLTDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQKV 230
           ++ IN  L+    Y  +      D+V L +F + F      E  + E+L++ Q  RG ++
Sbjct: 21  NRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRI 80

Query: 231 TWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVILR 410
              D+K  +  +        +  L+LEK+V+Q+ L L KLA EK D  L  F++   +  
Sbjct: 81  FLQDIKKPDRDDWENGLTAMECALHLEKNVNQSLLELHKLATEKNDPHLCDFIETHYLDE 140

Query: 411 QIKVIRKRASQLRNLRRSG 467
           Q+K I++    + NLR+ G
Sbjct: 141 QVKAIKQLGDHVTNLRKMG 159

>sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit)
          Length = 186

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
 Frame = +3

Query: 60  INRM--LHLCQGYRQVEIRCL--TDEVNLMSFGRLFELIRQLEGRYTEELIRFQVNRGQK 227
           INR   L L   Y  + + C    D+V L +F + F      E  + E+L++ Q  RG +
Sbjct: 26  INRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR 85

Query: 228 VTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDLTSFLKDRVIL 407
           +   D+K  +  +        +  L+LEK V+Q+ L L KLA +K D  L  F++   + 
Sbjct: 86  IFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETHYLN 145

Query: 408 RQIKVIRKRASQLRNLRRSG 467
            Q+K I++    + NLR+ G
Sbjct: 146 EQVKSIKELGDHVTNLRKMG 165

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,542,139
Number of Sequences: 369166
Number of extensions: 1117199
Number of successful extensions: 2975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00633

Planaria EST Database

DrC_00633

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail