Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I11
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 59 5e-09
sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17) 59 8e-09
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 57 2e-08
sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M) 56 4e-08
sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H) 55 1e-07
sp|P42577|FRIS_LYMST Soma ferritin 54 2e-07
sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit) 54 2e-07
sp|P08267|FRIH_CHICK Ferritin heavy chain (Ferritin H subunit) 54 2e-07
sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (... 54 2e-07
sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit) 53 4e-07
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 59.3 bits (142), Expect = 5e-09
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDL 184
+++Q RG +V D+K E E E Q L LEK V+Q L L KLA +K+D L
Sbjct: 67 LKYQNKRGGRVVLQDIKKPERDEWSNTLEAMQAALQLEKTVNQALLDLHKLASDKVDPQL 126
Query: 185 TSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
FL+ + Q+K +++ + NL+R G
Sbjct: 127 CDFLESEYLEEQVKAMKELGDYITNLKRLG 156
>sp|P49948|FRIH2_XENLA Ferritin heavy chain 2 (XL2-17)
Length = 176
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDL 184
+++Q RG +V D+K E E E Q L LEK V+Q L L KLA +K+D L
Sbjct: 67 LKYQNKRGGRVVLQDIKKPERDEWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAHL 126
Query: 185 TSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
FL+ + Q+K +++ + NL+R G
Sbjct: 127 CDFLESEYLEEQVKAMKQLGDYITNLKRLG 156
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 57.4 bits (137), Expect = 2e-08
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDL 184
+++Q RG +V D+K E E E Q L LEK V+Q L L KLA +K+D L
Sbjct: 67 MKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHL 126
Query: 185 TSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
FL+ + Q+K I++ + NL+R G
Sbjct: 127 CDFLESEYLEEQVKDIKRIGDFITNLKRLG 156
>sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M)
Length = 176
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/108 (32%), Positives = 54/108 (50%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L+ FQ RG ++ D+K E E E Q L LEK+V+Q L L K+A +K+D
Sbjct: 66 LLSFQNKRGGRILLQDIKKPERDEWGNGLEAMQCALQLEKNVNQALLDLHKIASDKVDPH 125
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSGDDVTPFLTSSLHARHEI 325
L FL+ + Q++ I+K + NL + D V + L +H +
Sbjct: 126 LCDFLETHYLNEQVEAIKKLGDHITNLTKM-DAVKNKMAEYLFDKHTL 172
>sp|P07229|FRI1_RANCA Ferritin, higher subunit (Ferritin H)
Length = 176
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/91 (35%), Positives = 47/91 (51%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L++ Q RG ++ DVK E E E Q L LEK V+Q L L K+ +K+D
Sbjct: 66 LMKDQNKRGGRIVLQDVKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPH 125
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
L FL+ + Q+K I++ + NL+R G
Sbjct: 126 LCDFLETEYLEEQVKSIKQLGDYITNLKRLG 156
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 54.3 bits (129), Expect = 2e-07
Identities = 29/98 (29%), Positives = 50/98 (51%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L+++Q RG ++ D+K + E E Q L LEK V+Q+ L L KL D
Sbjct: 67 LMKYQNKRGGRIVLQDIKKPDRDEWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDAQ 126
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSGDDVTPFL 295
+ FL+ + Q+K I++ + + NL+R G + ++
Sbjct: 127 MADFLESEFLEEQVKSIKELSDYITNLKRVGPGLGEYI 164
>sp|P25915|FRIH_RABIT Ferritin heavy chain (Ferritin H subunit)
Length = 164
Score = 54.3 bits (129), Expect = 2e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L++ Q RG ++ D+K E+ + + L+LEK V+Q+ L L KLA +K D
Sbjct: 51 LMKLQNQRGGRIFLQDIKKPEYDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPH 110
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
L F++ + Q+K I++ + NLR+ G
Sbjct: 111 LCDFIETHYLNEQVKSIKELGDHVTNLRKMG 141
>sp|P08267|FRIH_CHICK Ferritin heavy chain (Ferritin H subunit)
Length = 180
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L++ Q RG ++ D+K + + + L+LEK+V+Q+ L L KLA EK D
Sbjct: 69 LMKLQNQRGGRIFLQDIKKPDRDDWENGLTAMECALHLEKNVNQSLLELHKLATEKNDPH 128
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
L F++ + Q+K I++ + NLR+ G
Sbjct: 129 LCDFIETHYLDEQVKAIKQLGDHVTNLRKMG 159
>sp|Q7SXA5|FRIL_XENLA Ferritin light chain, oocyte isoform (B-ferritin) (XeBF) (GV-LCH)
Length = 177
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +2
Query: 5 IRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVDL 184
++FQ RG +V DVK + E + + LNLEK ++Q L L K+A + D +
Sbjct: 69 LKFQNKRGGRVVLQDVKKPDDDEWGNGTKAMEVALNLEKSINQAVLDLHKIATDHTDPHM 128
Query: 185 TSFLKDRVILRQIKVIRKRASQLRNLRR 268
+L+ + ++K+I+K L NLRR
Sbjct: 129 QDYLEHEFLEEEVKLIKKLGDHLTNLRR 156
>sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +2
Query: 2 LIRFQVNRGQKVTWYDVKPVEHIETPKPFEMFQTILNLEKDVHQNTLRLCKLACEKLDVD 181
L++ Q RG ++ D+K + + + L+LEK+V+Q+ L L KLA +K D
Sbjct: 70 LMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPH 129
Query: 182 LTSFLKDRVILRQIKVIRKRASQLRNLRRSG 274
L FL+ + Q+K I++ + NLR+ G
Sbjct: 130 LCDFLETHYLNEQVKAIKELGDHVTNLRKMG 160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,924,012
Number of Sequences: 369166
Number of extensions: 840629
Number of successful extensions: 2142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)