Planarian EST Database

DrC_00563

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00563 GTTTATCGAAACCGGAACGTTGACAATAATTAAATGAATCCAGAATATGACTATTTATTC AAACTATTATTAATTGGGGATTCTGGTGTTGGAAAATCATGTTTATTGCTCAGATTTGCA GATGATACTTATACTGAAAGTTATATAAGCACTATTGGTGTTGACTTTAAAATCAGAACA ATTGAATTAGATGGAAAAACTATAAAATTACAAATTTGGGATACCGCTGGGCAGGAAAGA TTTAGAACAATAACTTCATCGTATTATAGAGGTGCTCATGGAAGAATTGTTGTATATGAT GTTACTGATCAAGATTCATTCAATAATGTTAAAAATTGGCTAAACGAAATTGATAGGTAT GCAAATGAAAATGTCAATAAGTTGTTAGTTGGGAATAAAACTGATTTGATCTCGAAAAGA GTTGTTGATACCGCGACTTCTAAAGAATATGCTGATTCACTTAACATTCCATTCCTTGAA ACGAGTGCTAAAGACGCCACTAATGTAGAACAAGCCTTTTTAACAATGGCTGGTGAAATA AAAAGCCGATCGGGTCCTCCAGCATCGAGCTCTCACAAACCAACAGTAAAAGTTGGAAGT GCTACTCAACCAGTAAAAGCCAGTTCTGGTTGTTGTTAACCAATGAAAATCCCATTTACT TTCTATCTAGTTAAAATGAACTTAAGATCACCGATCTTGGTTTATGATTTCATCACTGAA ATGTTTGTTGAATCTAATTTTGTGATTAATTAAAATGTGGTTAATATAAATAATGAAATA AACATTAACGTTTTTCT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00563
         (797 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05974|RAB1A_LYMST  Ras-related protein Rab-1A                 333   4e-91
sp|P22125|RAB1_DISOM  Ras-related protein ORAB-1                  328   8e-90
sp|Q9D1G1|RAB1B_MOUSE  Ras-related protein Rab-1B                 327   2e-89
sp|P10536|RAB1B_RAT  Ras-related protein Rab-1B                   327   3e-89
sp|Q9H0U4|RAB1B_HUMAN  Ras-related protein Rab-1B                 326   5e-89
sp|P62820|RAB1A_HUMAN  Ras-related protein Rab-1A (YPT1-rela...   325   1e-88
sp|Q52NJ2|RAB1A_PIG  Ras-related protein Rab-1A                   323   3e-88
sp|P11620|YPT1_SCHPO  Ras-related protein ypt1                    322   7e-88
sp|Q39571|YPTC1_CHLRE  GTP-binding protein YPTC1                  311   1e-84
sp|P40392|RIC1_ORYSA  Ras-related protein RIC1                    308   1e-83

>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
          Length = 205

 Score =  333 bits (853), Expect = 4e-91
 Identities = 168/202 (83%), Positives = 183/202 (90%), Gaps = 1/202 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNP+YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4   MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
           NK+DL +K+VVD  T+KEYAD L IPFLETSAK+ATNVEQAF+TMA EIK+R GP  A+S
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183

Query: 571 SHKPTVKVGSATQPVKASSGCC 636
             KP+VK+ S+T PV A+ G C
Sbjct: 184 DSKPSVKINSST-PVSANKGGC 204

>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
          Length = 202

 Score =  328 bits (842), Expect = 8e-90
 Identities = 165/201 (82%), Positives = 176/201 (87%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASSS 573
           NK DL +K+VVD  T+KE+ADSL IPFLETSAK+ATNVEQAF+TMA EIK R GP A+S 
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSG 180

Query: 574 HKPTVKVGSATQPVKASSGCC 636
                 V   + PVK+S G C
Sbjct: 181 GSEKSNVNIQSTPVKSSGGGC 201

>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
          Length = 201

 Score =  327 bits (838), Expect = 2e-89
 Identities = 166/203 (81%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
           NK+DL +K+VVD  T+KE+ADSL +PFLETSAK+ATNVEQAF+TMA EIK R GP  AS 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
             +P +K+ S   PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKPASGGCC 201

>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
          Length = 201

 Score =  327 bits (837), Expect = 3e-89
 Identities = 165/203 (81%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRT+TSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
           NK+DL +K+VVD  T+KE+ADSL +PFLETSAK+ATNVEQAF+TMA EIK R GP  AS 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
             +P +K+ S   PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKSASGGCC 201

>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
          Length = 201

 Score =  326 bits (835), Expect = 5e-89
 Identities = 166/203 (81%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
           NK+DL +K+VVD  T+KE+ADSL IPFLETSAK+ATNVEQAF+TMA EIK R GP  AS 
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
             +P +K+ S   PVK A  GCC
Sbjct: 181 GERPNLKIDST--PVKPAGGGCC 201

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
 sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
 sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
 sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
          Length = 205

 Score =  325 bits (832), Expect = 1e-88
 Identities = 166/203 (81%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASS- 570
           NK DL +K+VVD  T+KE+ADSL IPFLETSAK+ATNVEQ+F+TMA EIK R GP A++ 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 571 -SHKPTVKVGSATQPVKASSGCC 636
            + K  VK+ S   PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204

>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
          Length = 205

 Score =  323 bits (829), Expect = 3e-88
 Identities = 166/203 (81%), Positives = 178/203 (87%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVG 123

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASS- 570
           NK DL +K+VVD  T+KE+ADSL IPFLETSAK+ATNVEQ+F+TMA EIK R GP A++ 
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183

Query: 571 -SHKPTVKVGSATQPVKASSGCC 636
            + K  VK+ S   PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204

>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
          Length = 203

 Score =  322 bits (825), Expect = 7e-88
 Identities = 160/203 (78%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT EL+GKT+KLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG I+VYDVTDQDSFNNVK WL EIDRYA E VN+LLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPP--AS 567
           NK+D++ K+VV+ + +KE+ADSLNIPFLETSAKD+TNVEQAFLTM+ +IK R G    AS
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180

Query: 568 SSHKPTVKVGSATQPVKASSGCC 636
           S+ K +VKVG  T   ++SS CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
          Length = 203

 Score =  311 bits (797), Expect = 1e-84
 Identities = 157/203 (77%), Positives = 173/203 (85%), Gaps = 2/203 (0%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELDGK IKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSR--SGPPAS 567
           NK+DL SK+VV+ + +K +AD + IPFLETSAK+ATNVEQAF+TMA EIK+R  S P  +
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180

Query: 568 SSHKPTVKVGSATQPVKASSGCC 636
            +  P V+          SS CC
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSCC 203

>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
          Length = 202

 Score =  308 bits (788), Expect = 1e-83
 Identities = 154/201 (76%), Positives = 164/201 (81%)
 Frame = +1

Query: 34  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60

Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
           IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120

Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASSS 573
           NK DL   RVV     K  AD + IPFLETSAKDATNVE+AF+TMAGEIK+R      ++
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGRTN 180

Query: 574 HKPTVKVGSATQPVKASSGCC 636
                 V    QPV   S CC
Sbjct: 181 ASKPATVQMPRQPVAQQSSCC 201

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,218,122
Number of Sequences: 369166
Number of extensions: 1477835
Number of successful extensions: 5898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5435
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00563

Planaria EST Database

DrC_00563

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail