Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M07
(507 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 165 6e-41
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 159 3e-39
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 158 8e-39
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 158 8e-39
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 157 2e-38
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 157 2e-38
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 155 4e-38
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 154 9e-38
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 145 5e-35
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 144 9e-35
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 165 bits (417), Expect = 6e-41
Identities = 84/116 (72%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KEYAD L IP
Sbjct: 90 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIP 149
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVKASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK+R GP A+S KP+VK+ S+T PV A+ G C
Sbjct: 150 FLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSST-PVSANKGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 159 bits (403), Expect = 3e-39
Identities = 80/115 (69%), Positives = 91/115 (79%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IP
Sbjct: 87 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK R GP A+S V + PVK+S G C
Sbjct: 147 FLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 158 bits (399), Expect = 8e-39
Identities = 81/117 (69%), Positives = 95/117 (81%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +P
Sbjct: 87 VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 147 FLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKSASGGCC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 158 bits (399), Expect = 8e-39
Identities = 81/117 (69%), Positives = 95/117 (81%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +P
Sbjct: 87 VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 147 FLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 157 bits (396), Expect = 2e-38
Identities = 81/117 (69%), Positives = 94/117 (80%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL IP
Sbjct: 87 VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK A GCC
Sbjct: 147 FLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPAGGGCC 201
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 157 bits (396), Expect = 2e-38
Identities = 79/117 (67%), Positives = 95/117 (81%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQDSFNNVK WL EIDRYA E VN+LLVGNK+D++ K+VV+ + +KE+ADSLNIP
Sbjct: 87 VYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGPP--ASSSHKPTVKVGSATQPVKASSGCC 346
FLETSAKD+TNVEQAFLTM+ +IK R G ASS+ K +VKVG T ++SS CC
Sbjct: 147 FLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 155 bits (393), Expect = 4e-38
Identities = 81/117 (69%), Positives = 94/117 (80%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IP
Sbjct: 90 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP 149
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 346
FLETSAK+ATNVEQ+F+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 150 FLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 154 bits (390), Expect = 9e-38
Identities = 81/117 (69%), Positives = 93/117 (79%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IP
Sbjct: 90 VYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP 149
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 346
FLETSAK+ATNVEQ+F+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 150 FLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 145 bits (366), Expect = 5e-35
Identities = 73/115 (63%), Positives = 81/115 (70%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVGNK DL RVV K AD + IP
Sbjct: 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 346
FLETSAKDATNVE+AF+TMAGEIK+R ++ V QPV S CC
Sbjct: 147 FLETSAKDATNVEKAFMTMAGEIKNRMASQGRTNASKPATVQMPRQPVAQQSSCC 201
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 144 bits (364), Expect = 9e-35
Identities = 74/117 (63%), Positives = 89/117 (76%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 VYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIP 181
VYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVGNK+DL SK+VV+ + +K +AD + IP
Sbjct: 87 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIP 146
Query: 182 FLETSAKDATNVEQAFLTMAGEIKSR--SGPPASSSHKPTVKVGSATQPVKASSGCC 346
FLETSAK+ATNVEQAF+TMA EIK+R S P + + P V+ SS CC
Sbjct: 147 FLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,140,579
Number of Sequences: 369166
Number of extensions: 879258
Number of successful extensions: 3211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3109
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)