Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B12
(775 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 335 6e-92
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 331 1e-90
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 330 3e-90
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 329 4e-90
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 328 8e-90
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 327 2e-89
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 326 4e-89
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 325 1e-88
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 314 2e-85
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 310 2e-84
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 335 bits (860), Expect = 6e-92
Identities = 169/202 (83%), Positives = 184/202 (91%), Gaps = 1/202 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNP+YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 548
NK+DL +K+VVD T+KEYAD L IPFLETSAK+ATNVEQAF+TMA EIK+R GP A+S
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183
Query: 549 SHKPTVKVGSATQPVKASSGCC 614
KP+VK+ S+T PV A+ G C
Sbjct: 184 DSKPSVKINSST-PVSANKGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 331 bits (849), Expect = 1e-90
Identities = 166/201 (82%), Positives = 177/201 (88%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASSS 551
NK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQAF+TMA EIK R GP A+S
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSG 180
Query: 552 HKPTVKVGSATQPVKASSGCC 614
V + PVK+S G C
Sbjct: 181 GSEKSNVNIQSTPVKSSGGGC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 330 bits (845), Expect = 3e-90
Identities = 167/203 (82%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 548
NK+DL +K+VVD T+KE+ADSL +PFLETSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 549 SHKPTVKVGSATQPVK-ASSGCC 614
+P +K+ S PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKPASGGCC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 329 bits (844), Expect = 4e-90
Identities = 166/203 (81%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRT+TSSYYRGAHGIIVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 548
NK+DL +K+VVD T+KE+ADSL +PFLETSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 549 SHKPTVKVGSATQPVK-ASSGCC 614
+P +K+ S PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKSASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 328 bits (842), Expect = 8e-90
Identities = 167/203 (82%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGP-PASS 548
NK+DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 549 SHKPTVKVGSATQPVK-ASSGCC 614
+P +K+ S PVK A GCC
Sbjct: 181 GERPNLKIDST--PVKPAGGGCC 201
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 327 bits (839), Expect = 2e-89
Identities = 167/203 (82%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASS- 548
NK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQ+F+TMA EIK R GP A++
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
Query: 549 -SHKPTVKVGSATQPVKASSGCC 614
+ K VK+ S PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 326 bits (836), Expect = 4e-89
Identities = 167/203 (82%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASS- 548
NK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQ+F+TMA EIK R GP A++
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
Query: 549 -SHKPTVKVGSATQPVKASSGCC 614
+ K VK+ S PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 325 bits (832), Expect = 1e-88
Identities = 161/203 (79%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT EL+GKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQDSFNNVK WL EIDRYA E VN+LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPP--AS 545
NK+D++ K+VV+ + +KE+ADSLNIPFLETSAKD+TNVEQAFLTM+ +IK R G AS
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 546 SSHKPTVKVGSATQPVKASSGCC 614
S+ K +VKVG T ++SS CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 314 bits (804), Expect = 2e-85
Identities = 158/203 (77%), Positives = 174/203 (85%), Gaps = 2/203 (0%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELDGK IKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSR--SGPPAS 545
NK+DL SK+VV+ + +K +AD + IPFLETSAK+ATNVEQAF+TMA EIK+R S P +
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180
Query: 546 SSHKPTVKVGSATQPVKASSGCC 614
+ P V+ SS CC
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSCC 203
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 310 bits (795), Expect = 2e-84
Identities = 155/201 (77%), Positives = 165/201 (82%)
Frame = +3
Query: 12 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 191
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 192 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 371
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 372 NKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAFLTMAGEIKSRSGPPASSS 551
NK DL RVV K AD + IPFLETSAKDATNVE+AF+TMAGEIK+R ++
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGRTN 180
Query: 552 HKPTVKVGSATQPVKASSGCC 614
V QPV S CC
Sbjct: 181 ASKPATVQMPRQPVAQQSSCC 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,117,421
Number of Sequences: 369166
Number of extensions: 1418792
Number of successful extensions: 5743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5280
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)