Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F16
(135 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 33 0.26
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 30 1.7
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 30 2.2
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 30 2.2
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 28 6.5
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 28 6.5
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 32.7 bits (73), Expect = 0.26
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 IKSRSGP-PASSSHKPTVKVGSATQPVKASSGCC 101
IK+R GP A+S KP+VK+ S+T PV A+ G C
Sbjct: 172 IKNRMGPITAASDSKPSVKINSST-PVSANKGGC 204
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 3 IKSRSGPP--ASSSHKPTVKVGSATQPVKASSGCC 101
IK R G ASS+ K +VKVG T ++SS CC
Sbjct: 169 IKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 3 IKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 101
IK R GP AS +P +K+ S PVK AS GCC
Sbjct: 169 IKKRMGPGAASGGERPNLKIDST--PVKSASGGCC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 3 IKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 101
IK R GP AS +P +K+ S PVK AS GCC
Sbjct: 169 IKKRMGPGAASGGERPNLKIDST--PVKPASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 3 IKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 101
IK R GP AS +P +K+ S PVK A GCC
Sbjct: 169 IKKRMGPGAASGGERPNLKIDST--PVKPAGGGCC 201
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 3 IKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 101
IK R GP A+S V + PVK+S G C
Sbjct: 169 IKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,189,733
Number of Sequences: 369166
Number of extensions: 177854
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)