Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A18
(336 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 150 7e-37
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 145 3e-35
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 144 8e-35
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 144 8e-35
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 142 2e-34
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 142 2e-34
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 141 4e-34
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 140 7e-34
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 131 6e-31
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 130 9e-31
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 150 bits (380), Expect = 7e-37
Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 1/109 (0%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+SFNNVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KEYAD L IPFLETSAK
Sbjct: 97 ESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAK 156
Query: 183 DATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVKASSGCC 326
+ATNVEQAF+TMA EIK+R GP A+S KP+VK+ S+T PV A+ G C
Sbjct: 157 NATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSST-PVSANKGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 145 bits (366), Expect = 3e-35
Identities = 73/108 (67%), Positives = 84/108 (77%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK
Sbjct: 94 ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 326
+ATNVEQAF+TMA EIK R GP A+S V + PVK+S G C
Sbjct: 154 NATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 144 bits (362), Expect = 8e-35
Identities = 74/110 (67%), Positives = 88/110 (80%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +PFLETSAK
Sbjct: 94 ESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 326
+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 154 NATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKSASGGCC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 144 bits (362), Expect = 8e-35
Identities = 74/110 (67%), Positives = 88/110 (80%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +PFLETSAK
Sbjct: 94 ESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 326
+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 154 NATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 142 bits (359), Expect = 2e-34
Identities = 74/110 (67%), Positives = 87/110 (79%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+S+ NVK WL EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL IPFLETSAK
Sbjct: 94 ESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 326
+ATNVEQAF+TMA EIK R GP AS +P +K+ S PVK A GCC
Sbjct: 154 NATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPAGGGCC 201
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 142 bits (359), Expect = 2e-34
Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
DSFNNVK WL EIDRYA E VN+LLVGNK+D++ K+VV+ + +KE+ADSLNIPFLETSAK
Sbjct: 94 DSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGPP--ASSSHKPTVKVGSATQPVKASSGCC 326
D+TNVEQAFLTM+ +IK R G ASS+ K +VKVG T ++SS CC
Sbjct: 154 DSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 141 bits (356), Expect = 4e-34
Identities = 74/110 (67%), Positives = 87/110 (79%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK
Sbjct: 97 ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 156
Query: 183 DATNVEQAFLTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 326
+ATNVEQ+F+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 157 NATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 140 bits (354), Expect = 7e-34
Identities = 74/109 (67%), Positives = 86/109 (78%), Gaps = 2/109 (1%)
Frame = +3
Query: 6 SFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKD 185
SFNNVK WL EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK+
Sbjct: 98 SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 186 ATNVEQAFLTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 326
ATNVEQ+F+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 131 bits (329), Expect = 6e-31
Identities = 66/108 (61%), Positives = 74/108 (68%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+SFNNVK WLNEIDRYA+ENVNKLLVGNK DL RVV K AD + IPFLETSAK
Sbjct: 94 ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 326
DATNVE+AF+TMAGEIK+R ++ V QPV S CC
Sbjct: 154 DATNVEKAFMTMAGEIKNRMASQGRTNASKPATVQMPRQPVAQQSSCC 201
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 130 bits (327), Expect = 9e-31
Identities = 67/110 (60%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 DSFNNVKNWLNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAK 182
+SFNNVK WLNEIDRYA+ENVNKLLVGNK+DL SK+VV+ + +K +AD + IPFLETSAK
Sbjct: 94 ESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAK 153
Query: 183 DATNVEQAFLTMAGEIKSR--SGPPASSSHKPTVKVGSATQPVKASSGCC 326
+ATNVEQAF+TMA EIK+R S P + + P V+ SS CC
Sbjct: 154 NATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,077,578
Number of Sequences: 369166
Number of extensions: 582679
Number of successful extensions: 2492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2441
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)