Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P11
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 134 1e-31
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 131 7e-31
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 131 7e-31
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 130 2e-30
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 128 5e-30
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 124 7e-29
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 124 7e-29
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 124 9e-29
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 114 9e-26
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 113 2e-25
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 134 bits (336), Expect = 1e-31
Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KEYAD L IPFLETSAK+ATNVEQAF
Sbjct: 106 LQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAF 165
Query: 183 LTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVKASSGCC 299
+TMA EIK+R GP A+S KP+VK+ S+T PV A+ G C
Sbjct: 166 MTMAAEIKNRMGPITAASDSKPSVKINSST-PVSANKGGC 204
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 131 bits (329), Expect = 7e-31
Identities = 69/101 (68%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +PFLETSAK+ATNVEQAF
Sbjct: 103 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAF 162
Query: 183 LTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 299
+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 163 MTMAAEIKKRMGPGAASGGERPNLKIDST--PVKSASGGCC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 131 bits (329), Expect = 7e-31
Identities = 69/101 (68%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL +PFLETSAK+ATNVEQAF
Sbjct: 103 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAF 162
Query: 183 LTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 299
+TMA EIK R GP AS +P +K+ S PVK AS GCC
Sbjct: 163 MTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 130 bits (326), Expect = 2e-30
Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK+DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQAF
Sbjct: 103 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 162
Query: 183 LTMAGEIKSRSGP-PASSSHKPTVKVGSATQPVK-ASSGCC 299
+TMA EIK R GP AS +P +K+ S PVK A GCC
Sbjct: 163 MTMAAEIKKRMGPGAASGGERPNLKIDST--PVKPAGGGCC 201
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 128 bits (322), Expect = 5e-30
Identities = 66/99 (66%), Positives = 76/99 (76%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQAF
Sbjct: 103 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAF 162
Query: 183 LTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 299
+TMA EIK R GP A+S V + PVK+S G C
Sbjct: 163 MTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGGC 201
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 124 bits (312), Expect = 7e-29
Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQ+F
Sbjct: 106 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
Query: 183 LTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 299
+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 166 MTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 124 bits (312), Expect = 7e-29
Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA+ENVNKLLVGNK DL +K+VVD T+KE+ADSL IPFLETSAK+ATNVEQ+F
Sbjct: 106 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
Query: 183 LTMAGEIKSRSGPPASS--SHKPTVKVGSATQPVKASSGCC 299
+TMA EIK R GP A++ + K VK+ S PVK S G C
Sbjct: 166 MTMAAEIKKRMGPGATAGGAEKSNVKIQST--PVKQSGGGC 204
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 124 bits (311), Expect = 9e-29
Identities = 64/101 (63%), Positives = 80/101 (79%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
L EIDRYA E VN+LLVGNK+D++ K+VV+ + +KE+ADSLNIPFLETSAKD+TNVEQAF
Sbjct: 103 LQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAF 162
Query: 183 LTMAGEIKSRSGPP--ASSSHKPTVKVGSATQPVKASSGCC 299
LTM+ +IK R G ASS+ K +VKVG T ++SS CC
Sbjct: 163 LTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 114 bits (285), Expect = 9e-26
Identities = 59/99 (59%), Positives = 66/99 (66%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
LNEIDRYA+ENVNKLLVGNK DL RVV K AD + IPFLETSAKDATNVE+AF
Sbjct: 103 LNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAF 162
Query: 183 LTMAGEIKSRSGPPASSSHKPTVKVGSATQPVKASSGCC 299
+TMAGEIK+R ++ V QPV S CC
Sbjct: 163 MTMAGEIKNRMASQGRTNASKPATVQMPRQPVAQQSSCC 201
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 113 bits (283), Expect = 2e-25
Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Frame = +3
Query: 3 LNEIDRYANENVNKLLVGNKTDLISKRVVDTATSKEYADSLNIPFLETSAKDATNVEQAF 182
LNEIDRYA+ENVNKLLVGNK+DL SK+VV+ + +K +AD + IPFLETSAK+ATNVEQAF
Sbjct: 103 LNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAF 162
Query: 183 LTMAGEIKSR--SGPPASSSHKPTVKVGSATQPVKASSGCC 299
+TMA EIK+R S P + + P V+ SS CC
Sbjct: 163 MTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,060,428
Number of Sequences: 369166
Number of extensions: 793590
Number of successful extensions: 2643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)