Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_J13
(782 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A 330 3e-90
sp|P22125|RAB1_DISOM Ras-related protein ORAB-1 326 5e-89
sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B 324 1e-88
sp|P10536|RAB1B_RAT Ras-related protein Rab-1B 324 2e-88
sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B 323 3e-88
sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-rela... 322 7e-88
sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A 321 2e-87
sp|P11620|YPT1_SCHPO Ras-related protein ypt1 319 5e-87
sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 308 8e-84
sp|P40392|RIC1_ORYSA Ras-related protein RIC1 305 9e-83
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
Length = 205
Score = 330 bits (846), Expect = 3e-90
Identities = 167/202 (82%), Positives = 182/202 (90%), Gaps = 1/202 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNP+YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
NK+DL +K+VVD T+KEYAD L IPFL TSAK+ATNVEQAF+TMA EIK+R GP A+S
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183
Query: 571 SHKPTVKVGSATQPVKASSGCC 636
KP+VK+ S+T PV A+ G C
Sbjct: 184 DSKPSVKINSST-PVSANKGGC 204
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
Length = 202
Score = 326 bits (835), Expect = 5e-89
Identities = 164/201 (81%), Positives = 175/201 (87%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGPPASSS 573
NK DL +K+VVD T+KE+ADSL IPFL TSAK+ATNVEQAF+TMA EIK R GP A+S
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSG 180
Query: 574 HKPTVKVGSATQPVKASSGCC 636
V + PVK+S G C
Sbjct: 181 GSEKSNVNIQSTPVKSSGGGC 201
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B
Length = 201
Score = 324 bits (831), Expect = 1e-88
Identities = 165/203 (81%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
NK+DL +K+VVD T+KE+ADSL +PFL TSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
+P +K+ S PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKPASGGCC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B
Length = 201
Score = 324 bits (830), Expect = 2e-88
Identities = 164/203 (80%), Positives = 179/203 (88%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRT+TSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
NK+DL +K+VVD T+KE+ADSL +PFL TSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
+P +K+ S PVK AS GCC
Sbjct: 181 GERPNLKIDST--PVKSASGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B
Length = 201
Score = 323 bits (828), Expect = 3e-88
Identities = 165/203 (81%), Positives = 178/203 (87%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+S+ NVK WL EIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGP-PASS 570
NK+DL +K+VVD T+KE+ADSL IPFL TSAK+ATNVEQAF+TMA EIK R GP AS
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 571 SHKPTVKVGSATQPVK-ASSGCC 636
+P +K+ S PVK A GCC
Sbjct: 181 GERPNLKIDST--PVKPAGGGCC 201
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
Length = 205
Score = 322 bits (825), Expect = 7e-88
Identities = 165/203 (81%), Positives = 178/203 (87%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGPPASS- 570
NK DL +K+VVD T+KE+ADSL IPFL TSAK+ATNVEQ+F+TMA EIK R GP A++
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
Query: 571 -SHKPTVKVGSATQPVKASSGCC 636
+ K VK+ S PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A
Length = 205
Score = 321 bits (822), Expect = 2e-87
Identities = 165/203 (81%), Positives = 177/203 (87%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ SFNNVK WL EIDRYA+ENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGPPASS- 570
NK DL +K+VVD T+KE+ADSL IPFL TSAK+ATNVEQ+F+TMA EIK R GP A++
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
Query: 571 -SHKPTVKVGSATQPVKASSGCC 636
+ K VK+ S PVK S G C
Sbjct: 184 GAEKSNVKIQST--PVKQSGGGC 204
>sp|P11620|YPT1_SCHPO Ras-related protein ypt1
Length = 203
Score = 319 bits (818), Expect = 5e-87
Identities = 159/203 (78%), Positives = 178/203 (87%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT EL+GKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG I+VYDVTDQDSFNNVK WL EIDRYA E VN+LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGPP--AS 567
NK+D++ K+VV+ + +KE+ADSLNIPFL TSAKD+TNVEQAFLTM+ +IK R G AS
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 568 SSHKPTVKVGSATQPVKASSGCC 636
S+ K +VKVG T ++SS CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
Length = 203
Score = 308 bits (790), Expect = 8e-84
Identities = 156/203 (76%), Positives = 172/203 (84%), Gaps = 2/203 (0%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELDGK IKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSR--SGPPAS 567
NK+DL SK+VV+ + +K +AD + IPFL TSAK+ATNVEQAF+TMA EIK+R S P +
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT 180
Query: 568 SSHKPTVKVGSATQPVKASSGCC 636
+ P V+ SS CC
Sbjct: 181 KAGGPVVRPQEGKPINSKSSSCC 203
>sp|P40392|RIC1_ORYSA Ras-related protein RIC1
Length = 202
Score = 305 bits (781), Expect = 9e-83
Identities = 153/201 (76%), Positives = 163/201 (81%)
Frame = +1
Query: 34 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 213
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 214 IWDTAGQERFRTITSSYYRGAHGRIVVYDVTDQDSFNNVKNWLNEIDRYANENVNKLLVG 393
IWDTAGQERFRTITSSYYRGAHG IVVYDVTDQ+SFNNVK WLNEIDRYA+ENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 394 NKTDLISKRVVDTATSKEYADSLNIPFLGTSAKDATNVEQAFLTMAGEIKSRSGPPASSS 573
NK DL RVV K AD + IPFL TSAKDATNVE+AF+TMAGEIK+R ++
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQGRTN 180
Query: 574 HKPTVKVGSATQPVKASSGCC 636
V QPV S CC
Sbjct: 181 ASKPATVQMPRQPVAQQSSCC 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,125,129
Number of Sequences: 369166
Number of extensions: 1526806
Number of successful extensions: 5953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5509
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)