Planaria EST Database

DrC_00477

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00477
         (1414 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96T60|PNKP_HUMAN  Bifunctional polynucleotide phosphatas...   280   7e-75
sp|Q9JLV6|PNKP_MOUSE  Bifunctional polynucleotide phosphatas...   270   6e-72
sp|Q19683|YZR5_CAEEL  Hypothetical protein F21D5.5 in chromo...   269   1e-71
sp|O13911|PNK1_SCHPO  Bifunctional polynucleotide phosphatas...   156   1e-37
sp|P21286|Y033_NPVAC  Hypothetical 20.8 kDa protein in FGF-V...   107   1e-22
sp|Q03796|TPP1_YEAST  Polynucleotide 3'-phosphatase (2'(3')-...    57   2e-07
sp|Q9HET9|TPP1_SACMI  Polynucleotide 3'-phosphatase (2'(3')-...    50   2e-05
sp|Q87QK9|HIS7_VIBPA  Histidine biosynthesis bifunctional pr...    43   0.003
sp|Q9KSX1|HIS7_VIBCH  Histidine biosynthesis bifunctional pr...    41   0.010
sp|P08116|PVA_PLAFA  Processed variable antigen                    40   0.013

>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase (Polynucleotide
            kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
            [Includes: Polynucleotide 3'-phosphatase
            (2'(3')-polynucleotidase); Polynucleotide
            5'-hydroxyl-kinase ]
          Length = 521

 Score =  280 bits (716), Expect = 7e-75
 Identities = 170/413 (41%), Positives = 235/413 (56%), Gaps = 2/413 (0%)
 Frame = +2

Query: 2    EKSETVESKDDTIHEA-VETNEEKMDKFKRKLGMVKDEEEDKDWVKGNGYLVYTPSDIKS 178
            E++ T ES+ DT     + + +EK D    K  M K    +  W      LV+T + +K 
Sbjct: 107  EETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKS---NPGWENLEKLLVFTAAGVKP 163

Query: 179  SEKIASFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVIFTNQGGIE 358
              K+A FDLDGTLI T+SGK F  G +DW+I + EIP KL+ LE EGYKLVIFTNQ  I 
Sbjct: 164  QGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFTNQMSIG 223

Query: 359  XXXXXXXXXXXXXXAIIEQLAVKIQVLVATNYSNVYRKPNTGMFDLLDKEHNSGIKINCD 538
                          A++E+L V  QVLVAT ++ +YRKP TGM+D L ++ N G  I+  
Sbjct: 224  RGKLPAEEFKAKVEAVVEKLGVPFQVLVAT-HAGLYRKPVTGMWDHLQEQANDGTPISIG 282

Query: 539  ESLYVGDAAGRVADWAP-KMKKDFSNSDRLFALNCHLKFYTPEAFFLQQEEGEFKMPEFH 715
            +S++VGDAAGR A+WAP + KKDFS +DRLFALN  L F TPE FFL+     F++P F 
Sbjct: 283  DSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAGFELPAFD 342

Query: 716  PAETVKNCPTLMIKYDKFQKSASDIKDILPKDSSEVVLILMVGYPGSGKSTFCKKYLEPL 895
            P  TV     L +   +   SAS              +++ VG+PG+GKSTF KK+L   
Sbjct: 343  P-RTVSRSGPLCLPESRALLSASP------------EVVVAVGFPGAGKSTFLKKHLVSA 389

Query: 896  GFNVINRDTLKTWQKCVAETQSLFXXXXXXXXXXTNPDLATRDRYISAAVECGVKHIICC 1075
            G+  +NRDTL +WQ+CV   ++            TNPD A+R RY+  A   GV    C 
Sbjct: 390  GYVHVNRDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVP-CRCF 448

Query: 1076 IMDVSEDQSRHNEHFRQLTADHHDHVSEMVFKIHKNKYVEPSDKEKFTEICKI 1234
            +   + +Q+RHN  FR++T   H  VS+MV   ++ ++  P+  E F+ I +I
Sbjct: 449  LFTATLEQARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEI 501

>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase (Polynucleotide
            kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
            [Includes: Polynucleotide 3'-phosphatase
            (2'(3')-polynucleotidase); Polynucleotide
            5'-hydroxyl-kinase ]
          Length = 522

 Score =  270 bits (691), Expect = 6e-72
 Identities = 165/398 (41%), Positives = 231/398 (58%), Gaps = 1/398 (0%)
 Frame = +2

Query: 44   EAVETNEEKMDKFKRKLGMVKDEEEDKDWVKGNGYLVYTPSDIKSSEKIASFDLDGTLID 223
            E  +T  +K    K  LG          W      LV+T S +K   K+A+FDLDGTLI 
Sbjct: 128  EGEDTEPQKKRVRKSSLG----------WESLKKLLVFTASGVKPQGKVAAFDLDGTLIT 177

Query: 224  TKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVIFTNQGGIEXXXXXXXXXXXXXXA 403
            T+SGK F    +DW+I + EIP KL+ L  EGYKLVIFTNQ GI               A
Sbjct: 178  TRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEA 237

Query: 404  IIEQLAVKIQVLVATNYSNVYRKPNTGMFDLLDKEHNSGIKINCDESLYVGDAAGRVADW 583
            ++E+L V  QVLVAT ++ + RKP +GM+D L ++ N GI I+ ++S++VGDAAGR+A+W
Sbjct: 238  VLEKLGVPFQVLVAT-HAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANW 296

Query: 584  AP-KMKKDFSNSDRLFALNCHLKFYTPEAFFLQQEEGEFKMPEFHPAETVKNCPTLMIKY 760
            AP + KKDFS +DRLFALN  L F TPE FFL+     F++P F P  T+ +   L +  
Sbjct: 297  APGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDP-RTISSAGPLYL-- 353

Query: 761  DKFQKSASDIKDILPKDSSEVVLILMVGYPGSGKSTFCKKYLEPLGFNVINRDTLKTWQK 940
                +S+S     L   + EVV  + VG+PG+GKSTF +++L   G+  +NRDTL +WQ+
Sbjct: 354  ---PESSS-----LLSPNPEVV--VAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQR 403

Query: 941  CVAETQSLFXXXXXXXXXXTNPDLATRDRYISAAVECGVKHIICCIMDVSEDQSRHNEHF 1120
            CV+  Q+            TNPD+ +R RYI  A + GV    C     + +Q+RHN  F
Sbjct: 404  CVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRF 462

Query: 1121 RQLTADHHDHVSEMVFKIHKNKYVEPSDKEKFTEICKI 1234
            R++T   H  VS+MV   ++ ++  P+  E F EI +I
Sbjct: 463  REMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEI 500

>sp|Q19683|YZR5_CAEEL Hypothetical protein F21D5.5 in chromosome IV
          Length = 407

 Score =  269 bits (688), Expect = 1e-71
 Identities = 163/393 (41%), Positives = 226/393 (57%), Gaps = 5/393 (1%)
 Frame = +2

Query: 134  KGNGYL-VYTPSDIKSSEKIASFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLE 310
            K NG L ++T S+ +  EKIA+FD+DGTLI TKSGK F     DW++ ++ IP+  K L 
Sbjct: 34   KDNGDLMIFTHSECEGKEKIAAFDMDGTLIKTKSGKVFPTNCQDWQLLYDSIPSDFKKLH 93

Query: 311  DEGYKLVIFTNQGGIEXXXXXXXXXXXXXXAIIEQLAVKIQVLVATNYSNVYRKPNTGMF 490
             +G+K+VIFTNQ GI               AI+ +L + +Q  V+    + YRKP  GM+
Sbjct: 94   SDGFKIVIFTNQKGIHAGKVDRNEFRKKIEAIVGKLGIPVQAFVSVAGGH-YRKPCVGMW 152

Query: 491  DLLDKEHNSGIKINCDESLYVGDAAGRVADWAPKMKKDFSNSDRLFALNCHLKFYTPEAF 670
            + L K  N  ++IN  ES++VGDAAGR+     + KKD S +DR FA N  +KF TPE F
Sbjct: 153  NEL-KLRNDEVEINEKESIFVGDAAGRIKT-TSRPKKDHSYADRFFAANVGVKFQTPEEF 210

Query: 671  FLQQEEGEFKMPEFHPAETVKNCPTLMIKYDKFQKSASDIKDILPKD----SSEVVLILM 838
            F     G+ K+ E          P     +D     + +I ++ P D    SSE  +ILM
Sbjct: 211  F-----GKSKVDE----------PWGPPNFDPKNLFSEEITELEPHDAQLKSSEKEIILM 255

Query: 839  VGYPGSGKSTFCKKYLEPLGFNVINRDTLKTWQKCVAETQSLFXXXXXXXXXXTNPDLAT 1018
            VG+PGSGKSTF K       + ++NRDT+ TWQKCVA T+S            T+PDL +
Sbjct: 256  VGFPGSGKSTFAKMLGHQHDYKIVNRDTIGTWQKCVAATRSYLADGKSVVIDNTSPDLES 315

Query: 1019 RDRYISAAVECGVKHIICCIMDVSEDQSRHNEHFRQLTADHHDHVSEMVFKIHKNKYVEP 1198
            R RYI  A E GV  I C  M+ S + ++HN  FR LT D+   +S MV +IHK KYVEP
Sbjct: 316  RKRYIDVAKELGVP-IRCFEMNCSMEHAQHNIRFRVLTDDNAAEISSMVLRIHKGKYVEP 374

Query: 1199 SDKEKFTEICKIVPALEFENDDHKCIYSKYLLE 1297
            +  E F++I K+    +FE ++H+ +Y  YL+E
Sbjct: 375  TLSEGFSQIVKVNFRPKFEVEEHEKLYKMYLIE 407

>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase (Polynucleotide
            kinase-3'-phosphatase) (DNA 5'-kinase/3'-phosphatase)
            [Includes: Polynucleotide 3'-phosphatase
            (2'(3')-polynucleotidase); Polynucleotide
            5'-hydroxy-kinase ]
          Length = 421

 Score =  156 bits (395), Expect = 1e-37
 Identities = 125/420 (29%), Positives = 189/420 (45%), Gaps = 26/420 (6%)
 Frame = +2

Query: 44   EAVETNEEKMDKFKRKLGMVKDEEEDKD----------WVKGNGYLVYTPSDIKSSEKIA 193
            E++ +  EK  K  +K G    + +             W   +   +     +K ++K  
Sbjct: 12   ESLTSYFEKSSKSSKKYGSQNKDSDSSSTCLQQKIEIQWSITDSLYIAKYGKLKKTKKFI 71

Query: 194  SFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVIFTNQGGIEXXXXX 373
            +FDLDGTLI TKSG+ F++   DW      +  KLK L  + Y LVIF+NQ GI      
Sbjct: 72   AFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLKALYQDNYSLVIFSNQNGIPRKPSA 131

Query: 374  XXXXXXXXXAIIEQLAVKIQVLVATNYSNVYRKPNTGMFDLLDKEHNSGIKINCDESLYV 553
                     AI E L + I VL A    + +RKP TGM++   K+ N  I ++  +  YV
Sbjct: 132  GHTFQMKIRAIFESLDLPI-VLYAAILKDKFRKPLTGMWNSFLKDVNRSIDLSFIK--YV 188

Query: 554  GDAAGRVADWAPKMKKDFSNSDRLFALNCHLKFYTPEAFFLQQEEGEFKMPEFHPAE-TV 730
            GDAAGR          D +++D  FA N  +KF TPE FFL           FHP    V
Sbjct: 189  GDAAGRPG--------DHNSTDLKFAENIGIKFETPEQFFLGHSFVPPNFESFHPKNYLV 240

Query: 731  KNCPTLMIKYDKFQKSASDIKDILPKDSSEVVLILMVGYPGSGKSTFCKKYLEPLGFNVI 910
            +N  +    +               K S    ++++VG+P SGKST  +  +   G+  +
Sbjct: 241  RNSSSHPYHF---------------KKSEHQEIVVLVGFPSSGKSTLAESQIVTQGYERV 285

Query: 911  NRDTLKTWQKCV-AETQSL------------FXXXXXXXXXXTNPDLATRDRYISAAVEC 1051
            N+D LKT  KC+ A  ++L                       TNP + +R  +I  A E 
Sbjct: 286  NQDILKTKSKCIKAAIEALKKEKSVVIGMYSIISTTYAISDNTNPTIESRKMWIDIAQEF 345

Query: 1052 GVKHIICCIMDVSEDQSRHNEHFRQLTADHHD--HVSEMVFKIHKNKYVEPSDKEKFTEI 1225
             +  I C  +  SE+ +RHN  FR +   HH+   + E+ F   K+++  P+ +E FT +
Sbjct: 346  EIP-IRCIHLQSSEELARHNNVFRYI---HHNQKQLPEIAFNSFKSRFQMPTVEEGFTNV 401

>sp|P21286|Y033_NPVAC Hypothetical 20.8 kDa protein in FGF-VUBI intergenic region (ORF 1)
          Length = 182

 Score =  107 bits (266), Expect = 1e-22
 Identities = 69/172 (40%), Positives = 96/172 (55%)
 Frame = +2

Query: 155 YTPSDIKSSEKIASFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVI 334
           Y   D     KIA+FDLDGTLI +K+  KF +  +DW++      +KLK L + GY LV+
Sbjct: 12  YAVHDGAKRTKIAAFDLDGTLISSKTRSKFPKNPDDWQLL--PCAHKLKRLYELGYDLVV 69

Query: 335 FTNQGGIEXXXXXXXXXXXXXXAIIEQLAVKIQVLVATNYSNVYRKPNTGMFDLLDKEHN 514
           FTNQ  +                I +   V I   V+ N  + +RKP+TGM+  + K+  
Sbjct: 70  FTNQAHLGSGKIKASDLLYKLENIKKATGVPISFYVSPN-KDEHRKPDTGMWREMAKQFT 128

Query: 515 SGIKINCDESLYVGDAAGRVADWAPKMKKDFSNSDRLFALNCHLKFYTPEAF 670
               I+ ++S YVGDAAGR+       +KDFS+SDR+FA N  L+FYTPE F
Sbjct: 129 ---HIDKEQSFYVGDAAGRIN--LTTGQKDFSDSDRVFAKNLSLQFYTPEQF 175

>sp|Q03796|TPP1_YEAST Polynucleotide 3'-phosphatase (2'(3')-polynucleotidase) (DNA 3'
           phosphatase) (Three prime phosphatase)
          Length = 238

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 61/214 (28%), Positives = 83/214 (38%), Gaps = 52/214 (24%)
 Frame = +2

Query: 188 IASFDLDGTLIDTKSGK-KFAEGINDWK-IKFNEIPNKLKTL-----EDEGYKLVIFTNQ 346
           + +FDLD T+I  KS    F+   +DW+ I FN   + L  L      D    +VIF+NQ
Sbjct: 31  VYAFDLDHTIIKPKSPNISFSRSASDWQFINFNSKKSTLDYLCNIIDNDPTAVIVIFSNQ 90

Query: 347 GGIEXXXXXXXXXXXXXXAIIEQL--------------------AVKIQVLVATNYSNV- 463
           GG+                I+  L                    A K     A N+S + 
Sbjct: 91  GGVITVPRTSKSCTKYTNKILLFLKAIKNDERGETLSHRLWLYAAPKRPKTFAANHSKIT 150

Query: 464 -----------------YRKPNTGMFDLLDKEHNSGIKINCDES-------LYVGDAAGR 571
                             RKP TGM +   ++  S  +++   S        Y GDAAGR
Sbjct: 151 FASLGESYNNDPNIFEKVRKPMTGMVEFFKRDLESAYRVSEQISPIKLNWIYYCGDAAGR 210

Query: 572 VADWAPKMKKDFSNSDRLFALNCHLKFYTPEAFF 673
                   KKDFS+SD  FA N H++F  PE  F
Sbjct: 211 --------KKDFSDSDIKFAENLHVEFKYPEEIF 236

>sp|Q9HET9|TPP1_SACMI Polynucleotide 3'-phosphatase (2'(3')-polynucleotidase) (DNA 3'
           phosphatase) (Three prime phosphatase)
          Length = 245

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 58/216 (26%), Positives = 82/216 (37%), Gaps = 54/216 (25%)
 Frame = +2

Query: 188 IASFDLDGTLIDTKS-GKKFAEGINDWKIKFNEIPNKLKTLE--------DEGYKLVIFT 340
           + +FDLD T+I  KS   K++   NDW+  F    +K  TL+        D    +VIF+
Sbjct: 38  VYAFDLDHTIIKPKSPNAKYSRSANDWQ--FMNFDSKKSTLDYLFSITDNDLAAVIVIFS 95

Query: 341 NQGGIEXXXXXXXXXXXXXXAII------------EQLAVKIQVLVAT------------ 448
           NQGG+                I             E+L+ ++ +  A             
Sbjct: 96  NQGGVITVPRTSKSCSKYINKISLFLKAIENDKRGEKLSPRLWIYAAPKRPKTVVTNNKK 155

Query: 449 --------NYSN------VYRKPNTGMFDLLDKEHNSGIK-------INCDESLYVGDAA 565
                   +Y+N        RKP TGM D    +     +       I  +   Y GDAA
Sbjct: 156 ITFPSLCKSYNNDPEIFEKVRKPMTGMADFFRIDITDACRVLKTVPPIKLNWVYYCGDAA 215

Query: 566 GRVADWAPKMKKDFSNSDRLFALNCHLKFYTPEAFF 673
           GR        K DFS+SD  FA   H++F  PE  F
Sbjct: 216 GR--------KNDFSDSDIKFAEKLHVEFKYPEEVF 243

>sp|Q87QK9|HIS7_VIBPA Histidine biosynthesis bifunctional protein hisB [Includes:
           Histidinol-phosphatase ; Imidazoleglycerol-phosphate
           dehydratase (IGPD)]
          Length = 357

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
 Frame = +2

Query: 170 IKSSEKIASFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVIFTNQG 349
           +   +KI   D DGTLI         + ++  K++   IP+ L +L+D GY+LV+ TNQ 
Sbjct: 1   MSKQQKILFIDRDGTLIVEPPIDFQVDRLDKLKLEPFVIPSLL-SLQDAGYRLVMVTNQD 59

Query: 350 GI---EXXXXXXXXXXXXXXAIIEQLAVKI-QVLVATNYSN---VYRKPNTGMFDLLDKE 508
           G+                   I E   VK   VL+  ++       RKP  GM     KE
Sbjct: 60  GLGTDSYPQEDFDAPHNMMMEIFESQGVKFDDVLICPHFEEDNCSCRKPKLGMV----KE 115

Query: 509 HNSGIKINCDESLYVGD 559
           +  G K++   S+ +GD
Sbjct: 116 YLQGGKVDFQNSVVIGD 132

>sp|Q9KSX1|HIS7_VIBCH Histidine biosynthesis bifunctional protein hisB [Includes:
           Histidinol-phosphatase ; Imidazoleglycerol-phosphate
           dehydratase (IGPD)]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
 Frame = +2

Query: 170 IKSSEKIASFDLDGTLIDTKSGKKFAEGINDWKIKFNEIPNKLKTLEDEGYKLVIFTNQG 349
           +   +KI   D DGTLI         + ++  K++   IP+ LK L++ GY+LV+ TNQ 
Sbjct: 1   MSKQQKILFIDRDGTLIVEPPVDFQVDRLDKLKLEPYVIPSLLK-LQEAGYRLVMVTNQD 59

Query: 350 GI---EXXXXXXXXXXXXXXAIIEQLAVKI-QVLVATNYSN---VYRKPNTGMFDLLDKE 508
           G+                   I E   VK   VL+  ++       RKP  G    L KE
Sbjct: 60  GLGTSSYPQADFDAPHNMMMDIFESQGVKFNDVLICPHFERDNCSCRKPKLG----LVKE 115

Query: 509 HNSGIKINCDESLYVGD 559
           +  G K++   S  +GD
Sbjct: 116 YLQGGKVDFKSSAVIGD 132

>sp|P08116|PVA_PLAFA Processed variable antigen
          Length = 224

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +2

Query: 2   EKSETVESKDDTIHEAVETNEEKMDKFKRKLGMVKDEEEDKDWVKGNGYLVYTPSDIKSS 181
           E  ET ESK+  I+E  ET   K+    R+   VK  EE KD     G  V  P +   +
Sbjct: 94  ESKETGESKETRIYE--ETKYNKITSEFRETENVKITEESKD---REGNKVSGPYENSEN 148

Query: 182 EKIASFDLDGTLIDTKS---GKKFAEGINDWKIKFNEIPNKLKTLEDEGYK 325
             + S   +   +  K    G+K  E +ND   + +E P KL   E+ G K
Sbjct: 149 SNVTSESEETKKLAEKEENEGEKLGENVNDGASENSEDPKKLTEQEENGTK 199

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,639,880
Number of Sequences: 369166
Number of extensions: 3129233
Number of successful extensions: 10328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10293
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 16837087640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00477

  1. Dr_sW_012_L04
  2. Dr_sW_014_I15
  3. Dr_sW_004_B12
  4. Dr_sW_016_E13
  5. Dr_sW_021_A08
  6. Dr_sW_007_D08