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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00453
         (634 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04832|HEXP_LEIMA  DNA-binding protein HEXBP (Hexamer-bin...   171   1e-42
sp|P36627|BYR3_SCHPO  Cellular nucleic acid binding protein ...   157   3e-38
sp|O42395|CNBP_CHICK  Cellular nucleic acid binding protein ...   140   4e-33
sp|P53996|CNBP_MOUSE  Cellular nucleic acid binding protein ...   138   1e-32
sp|P62634|CNBP_RAT  Cellular nucleic acid binding protein (C...   138   1e-32
sp|P53849|GIS2_YEAST  Zinc-finger protein GIS2                    136   5e-32
sp|Q8WW36|ZCH13_HUMAN  Zinc finger CCHC domain containing pr...   112   8e-25
sp|Q966L9|GLH2_CAEEL  ATP-dependent RNA helicase glh-2 (Germ...    94   4e-19
sp|P34689|GLH1_CAEEL  ATP-dependent RNA helicase glh-1 (Germ...    84   4e-16
sp|O76743|GLH4_CAEEL  ATP-dependent RNA helicase glh-4 (Germ...    76   6e-14

>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
          Length = 271

 Score =  171 bits (433), Expect = 1e-42
 Identities = 91/213 (42%), Positives = 114/213 (53%), Gaps = 29/213 (13%)
 Frame = +2

Query: 35  NQRRLECYNCGKEGHMSRECTENKKGGSNQRSGA--CFNCGLSGHMSRECPQXXXXXXXX 208
           ++R   C+ CG+EGHMSREC    + G+   +GA  CF CG +GHMSR+CP         
Sbjct: 39  DERSTTCFRCGEEGHMSRECPNEARSGA---AGAMTCFRCGEAGHMSRDCPNSAKPGAAK 95

Query: 209 XXXXXXXXVTCYNCGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEA 346
                     CY CG+ GHLS+DC            Q    S  +GG     TCYKCG+A
Sbjct: 96  GFE-------CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDA 148

Query: 347 GHISRNC--SQNG-SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGH 499
           GHISR+C   Q G S      CYKC   GH+SRDC           DR  KCY C +SGH
Sbjct: 149 GHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGH 206

Query: 500 MSRECPN----GQNEKKCYKCNNPGHLARDCSD 586
           MSRECP+    G  ++ CYKC  PGH++R+C +
Sbjct: 207 MSRECPSAGSTGSGDRACYKCGKPGHISRECPE 239

 Score =  162 bits (409), Expect = 9e-40
 Identities = 83/203 (40%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
 Frame = +2

Query: 47  LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXX 226
           + C+ CG+ GHMSR+C  + K G+  +   C+ CG  GH+SR+CP               
Sbjct: 70  MTCFRCGEAGHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128

Query: 227 XXV---------TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQ 373
                       TCY CG++GH+S+DC       S   G  TCYKCG+AGHISR+C   Q
Sbjct: 129 RSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQ 187

Query: 374 NG-SNERQMKCYKCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN------ 520
            G S     KCYKC + GHMSR+C   G+    DR   CY C K GH+SRECP       
Sbjct: 188 GGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYG 245

Query: 521 ---GQNEKKCYKCNNPGHLARDC 580
              G  ++ CYKC   GH++RDC
Sbjct: 246 GSRGGGDRTCYKCGEAGHISRDC 268

 Score =  144 bits (362), Expect = 2e-34
 Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
 Frame = +2

Query: 95  TENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSK 274
           TE+ K    + S +C NCG  GH +RECP+                 TC+ CGE GH+S+
Sbjct: 4   TEDVKRPRTESSTSCRNCGKEGHYARECPE-------ADSKGDERSTTCFRCGEEGHMSR 56

Query: 275 DCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC-- 442
           +C   N   S   G  TC++CGEAGH+SR+C  S      +  +CYKC Q GH+SRDC  
Sbjct: 57  EC--PNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPS 114

Query: 443 -----------------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCN 553
                             Q G      CY C  +GH+SR+CPNGQ       ++ CYKC 
Sbjct: 115 SQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCG 174

Query: 554 NPGHLARDC 580
           + GH++RDC
Sbjct: 175 DAGHISRDC 183

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 431 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE-----KKCYKCNNPGHLARDCSDE 589
           + D  +   +    C NC K GH +RECP   ++       C++C   GH++R+C +E
Sbjct: 4   TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61

>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
          Length = 179

 Score =  157 bits (396), Expect = 3e-38
 Identities = 74/185 (40%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
 Frame = +2

Query: 53  CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 232
           CYNCG+ GH +RECT         +   C+NC  +GH + EC +                
Sbjct: 19  CYNCGENGHQARECT---------KGSICYNCNQTGHKASECTEPQQEK----------- 58

Query: 233 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNE 388
            TCY CG +GHL +DC      +  PR G  CYKCG  GHI+R+C  N        G + 
Sbjct: 59  -TCYACGTAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHR 113

Query: 389 RQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHL 568
             M CY C  +GH +RDCT       VKCY+C K GH S EC    + + CYKCN PGH+
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHI 168

Query: 569 ARDCS 583
           A +C+
Sbjct: 169 AVNCT 173

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
 Frame = +2

Query: 20  SKMSYNQRRLECYNCGKEGHMSRECTENKKGGSNQRSGA-CFNCGLSGHMSRECPQXXXX 196
           S+ +  Q+   CY CG  GH+ R+C  +     N R GA C+ CG  GH++R+C +    
Sbjct: 49  SECTEPQQEKTCYACGTAGHLVRDCPSS----PNPRQGAECYKCGRVGHIARDC-RTNGQ 103

Query: 197 XXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN 376
                       + CY CG  GH ++DC+           G  CY CG+ GH S  C Q 
Sbjct: 104 QSGGRFGGHRSNMNCYACGSYGHQARDCTM----------GVKCYSCGKIGHRSFECQQA 153

Query: 377 GSNERQMKCYKCNQFGHMSRDCT 445
              +    CYKCNQ GH++ +CT
Sbjct: 154 SDGQ---LCYKCNQPGHIAVNCT 173

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
 Frame = +2

Query: 311 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 490
           R G  CY CGE GH +R C++         CY CNQ GH + +CT+   ++   CY C  
Sbjct: 14  RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65

Query: 491 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 580
           +GH+ R+CP+  N +   +CYKC   GH+ARDC
Sbjct: 66  AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 470 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 586
           +CYNC ++GH +REC  G     CY CN  GH A +C++
Sbjct: 18  RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53

>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 172

 Score =  140 bits (352), Expect = 4e-33
 Identities = 67/194 (34%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
 Frame = +2

Query: 50  ECYNCGKEGHMSRECTENKKGGSNQRS--------------GACFNCGLSGHMSRECPQX 187
           EC+ CG+ GH +REC      G   RS                C+ CG SGH++++C   
Sbjct: 5   ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC--- 61

Query: 188 XXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 367
                            CYNCG  GH++KDC E             CY CG+ GH++R+C
Sbjct: 62  ----------DLQEDKACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDC 106

Query: 368 SQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYK 547
                +  + KCY C +FGH+ +DCT      +VKCY C ++GH++  C +  +E  CY+
Sbjct: 107 ----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTSEVNCYR 155

Query: 548 CNNPGHLARDCSDE 589
           C   GHLAR+C+ E
Sbjct: 156 CGESGHLARECTIE 169

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
 Frame = +2

Query: 320 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------CYKCNQFGHMSRDCTQ 448
           N C+KCG  GH +R C       R M+                 CY+C + GH+++DC  
Sbjct: 4   NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63

Query: 449 DGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 580
                   CYNC + GH++++C  P  + E+ CY C  PGHLARDC
Sbjct: 64  ---QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106

>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 178

 Score =  138 bits (348), Expect = 1e-32
 Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
 Frame = +2

Query: 50  ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 169
           EC+ CG+ GH +REC      G   RS                      C+ CG SGH++
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 170 RECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAG 349
           ++C                    CYNCG  GH++KDC E             CY CG+ G
Sbjct: 65  KDC-------------DLQEDEACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPG 106

Query: 350 HISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQN 529
           H++R+C     +  + KCY C +FGH+ +DCT      +VKCY C ++GH++  C +  +
Sbjct: 107 HLARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTS 155

Query: 530 EKKCYKCNNPGHLARDCSDE 589
           E  CY+C   GHLAR+C+ E
Sbjct: 156 EVNCYRCGESGHLARECTIE 175

 Score = 89.0 bits (219), Expect = 9e-18
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
 Frame = +2

Query: 320 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 430
           N C+KCG +GH +R C   G   R M+                       CY+C + GH+
Sbjct: 4   NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63

Query: 431 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 580
           ++DC    ++    CYNC + GH++++C  P  + E+ CY C  PGHLARDC
Sbjct: 64  AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112

>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
 sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 177

 Score =  138 bits (348), Expect = 1e-32
 Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
 Frame = +2

Query: 50  ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 169
           EC+ CG+ GH +REC      G   RS                      C+ CG SGH++
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 170 RECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAG 349
           ++C                    CYNCG  GH++KDC E             CY CG+ G
Sbjct: 65  KDCDLQED--------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPG 105

Query: 350 HISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQN 529
           H++R+C     +  + KCY C +FGH+ +DCT      +VKCY C ++GH++  C +  +
Sbjct: 106 HLARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTS 154

Query: 530 EKKCYKCNNPGHLARDCSDE 589
           E  CY+C   GHLAR+C+ E
Sbjct: 155 EVNCYRCGESGHLARECTIE 174

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
 Frame = +2

Query: 320 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 430
           N C+KCG +GH +R C   G   R M+                       CY+C + GH+
Sbjct: 4   NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63

Query: 431 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 580
           ++DC    + ++  CYNC + GH++++C  P  + E+ CY C  PGHLARDC
Sbjct: 64  AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111

>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
          Length = 153

 Score =  136 bits (342), Expect = 5e-32
 Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
 Frame = +2

Query: 53  CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 232
           CY CGK GH++ +C   +          C+NC   GH+  +C                  
Sbjct: 6   CYVCGKIGHLAEDCDSER---------LCYNCNKPGHVQTDCTMPRTVEFKQ-------- 48

Query: 233 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCY 406
             CYNCGE+GH+  +C+ Q            C+ C + GHISR C +     R  ++ CY
Sbjct: 49  --CYNCGETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCY 95

Query: 407 KCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 580
           KC    HM++DC ++     +KCY C ++GHMSR+C   QN++ CY CN  GH+++DC
Sbjct: 96  KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150

 Score =  119 bits (298), Expect = 6e-27
 Identities = 58/155 (37%), Positives = 85/155 (54%)
 Frame = +2

Query: 53  CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 232
           CYNC K GH+  +CT  +     Q    C+NCG +GH+  EC                  
Sbjct: 25  CYNCNKPGHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQR-------------- 66

Query: 233 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 412
             C+NC ++GH+S++C E   + ++     +CYKCG   H++++C +       +KCY C
Sbjct: 67  --CFNCNQTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTC 121

Query: 413 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECP 517
            Q GHMSRDC    NDR   CYNCN++GH+S++CP
Sbjct: 122 GQAGHMSRDCQ---NDRL--CYNCNETGHISKDCP 151

 Score =  107 bits (267), Expect = 3e-23
 Identities = 52/131 (39%), Positives = 72/131 (54%)
 Frame = +2

Query: 50  ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX 229
           +CYNCG+ GH+  ECT  +          CFNC  +GH+SRECP+               
Sbjct: 48  QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPE-------PKKTSRFS 90

Query: 230 XVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYK 409
            V+CY CG   H++KDC +++        G  CY CG+AGH+SR+C     N+R   CY 
Sbjct: 91  KVSCYKCGGPNHMAKDCMKED-----GISGLKCYTCGQAGHMSRDC----QNDR--LCYN 139

Query: 410 CNQFGHMSRDC 442
           CN+ GH+S+DC
Sbjct: 140 CNETGHISKDC 150

 Score =  103 bits (256), Expect = 5e-22
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
 Frame = +2

Query: 134 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPR 313
           AC+ CG  GH++ +C                    CYNC + GH+  DC+        PR
Sbjct: 5   ACYVCGKIGHLAEDCDSERL---------------CYNCNKPGHVQTDCT-------MPR 42

Query: 314 GGN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCY 478
                 CY CGE GH+   C+         +C+ CNQ GH+SR+C +     +   V CY
Sbjct: 43  TVEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCY 95

Query: 479 NCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 589
            C    HM+++C   +G +  KCY C   GH++RDC ++
Sbjct: 96  KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 392 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 565
           Q  CY C + GH++ DC     D +  CYNCNK GH+  +C  P     K+CY C   GH
Sbjct: 3   QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57

Query: 566 LARDCS 583
           +  +C+
Sbjct: 58  VRSECT 63

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 29/79 (36%), Positives = 42/79 (53%)
 Frame = +2

Query: 44  RLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXX 223
           ++ CY CG   HM+++C + + G S  +   C+ CG +GHMSR+C               
Sbjct: 91  KVSCYKCGGPNHMAKDCMK-EDGISGLK---CYTCGQAGHMSRDCQNDR----------- 135

Query: 224 XXXVTCYNCGESGHLSKDC 280
                CYNC E+GH+SKDC
Sbjct: 136 ----LCYNCNETGHISKDC 150

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +2

Query: 47  LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQ 184
           L+CY CG+ GHMSR+C         Q    C+NC  +GH+S++CP+
Sbjct: 116 LKCYTCGQAGHMSRDC---------QNDRLCYNCNETGHISKDCPK 152

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 527 NEKKCYKCNNPGHLARDCSDE 589
           ++K CY C   GHLA DC  E
Sbjct: 2   SQKACYVCGKIGHLAEDCDSE 22

>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
          Length = 166

 Score =  112 bits (280), Expect = 8e-25
 Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
 Frame = +2

Query: 140 FNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV-------TCYNCGESGHLSKDCSEQNYR 298
           F CG SGH +R CP+                        TCY CGESG  +K+C      
Sbjct: 7   FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLL--- 63

Query: 299 NSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 478
                 GN CY CG +GHI+++C ++   ER+  CY C + GH++RDC +    ++ KCY
Sbjct: 64  ------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQ---KEQKCY 113

Query: 479 NCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 583
           +C K GH+ ++C     + KCY+C   GH+A +CS
Sbjct: 114 SCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144

 Score =  101 bits (252), Expect = 1e-21
 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
 Frame = +2

Query: 56  YNCGKEGHMSRECTENKKGG-------------SNQRSGACFNCGLSGHMSRECPQXXXX 196
           + CG  GH +R C     GG             S   S  C+ CG SG  ++ C      
Sbjct: 7   FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI 66

Query: 197 XXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN 376
                         CYNCG SGH++KDC +             CY CG  GH++R+C + 
Sbjct: 67  --------------CYNCGRSGHIAKDCKDPKRERR-----QHCYTCGRLGHLARDCDR- 106

Query: 377 GSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC 514
              +++ KCY C + GH+ +DC       QVKCY C + GH++  C
Sbjct: 107 ---QKEQKCYSCGKLGHIQKDCA------QVKCYRCGEIGHVAINC 143

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 40/132 (30%), Positives = 63/132 (47%)
 Frame = +2

Query: 53  CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 232
           CY CG+ G  ++ C              C+NCG SGH++++C                  
Sbjct: 47  CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKDPKRERRQH-------- 90

Query: 233 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 412
             CY CG  GHL++DC  Q  +         CY CG+ GHI ++C+Q       +KCY+C
Sbjct: 91  --CYTCGRLGHLARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRC 133

Query: 413 NQFGHMSRDCTQ 448
            + GH++ +C++
Sbjct: 134 GEIGHVAINCSK 145

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 28/83 (33%), Positives = 43/83 (51%)
 Frame = +2

Query: 38  QRRLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXX 217
           +RR  CY CG+ GH++R+C         Q+   C++CG  GH+ ++C Q           
Sbjct: 86  ERRQHCYTCGRLGHLARDC-------DRQKEQKCYSCGKLGHIQKDCAQ----------- 127

Query: 218 XXXXXVTCYNCGESGHLSKDCSE 286
                V CY CGE GH++ +CS+
Sbjct: 128 -----VKCYRCGEIGHVAINCSK 145

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +2

Query: 329 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 508
           + CG +GH +R C + G+  R+         G   R            CY C +SG  ++
Sbjct: 7   FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58

Query: 509 ECPNGQNEKKCYKCNNPGHLARDCSD 586
            C    N   CY C   GH+A+DC D
Sbjct: 59  NCVLLGNI--CYNCGRSGHIAKDCKD 82

>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
          Length = 974

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 63/240 (26%), Positives = 86/240 (35%), Gaps = 59/240 (24%)
 Frame = +2

Query: 38  QRRLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXX 217
           +R   C+NC + GH S +C E KK    +    C+NC   GH SR+CP+           
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGF 310

Query: 218 XXXXX-------------------VTCYNCGESGHLSKDCSEQNYRNSAPRGG------- 319
                                       N GESG  S      +    +  GG       
Sbjct: 311 TGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERN 370

Query: 320 NTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD---------------- 451
           N C+ C + GH S +C +         CY C Q GH SRDC ++                
Sbjct: 371 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGG 430

Query: 452 GND-----------------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 580
           GND                   +KC+NC   GH S ECP  +  + C+ C   GH + +C
Sbjct: 431 GNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNEC 488

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
 Frame = +2

Query: 122 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 301
           +R+  CFNC   GH S +CP+                  CYNC + GH S+DC E+    
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 301

Query: 302 SAPRGGNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSR 436
             PR G   +  G +G    N                  NG +      +  N  G  S 
Sbjct: 302 -KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSG 360

Query: 437 DCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 589
              QD  +R   C+NC + GH S +CP  + E++   CY C  PGH +RDC +E
Sbjct: 361 GGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
 Frame = +2

Query: 122 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 301
           +R+  CFNC   GH S +CP+                  CYNC + GH S+DC E+    
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 415

Query: 302 SAPRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGND 460
             PR G   +  G     + G    N    G+NE +  MKC+ C   GH S +C +    
Sbjct: 416 -KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG 474

Query: 461 RQVKCYNCNKSGHMSRECPN 520
               C+NC + GH S ECPN
Sbjct: 475 ----CFNCGEQGHRSNECPN 490

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 40/143 (27%), Positives = 58/143 (40%)
 Frame = +2

Query: 38  QRRLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXX 217
           +R   C+NC + GH S +C E KK    +    C+NC   GH SR+CP+           
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGF 424

Query: 218 XXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQM 397
                 + +  G  G      +E  + N+  RG   C+ C   GH S  C      E   
Sbjct: 425 -----TSGFGGGNDGGFGGGNAE-GFGNNEERGPMKCFNCKGEGHRSAECP-----EPPR 473

Query: 398 KCYKCNQFGHMSRDCTQDGNDRQ 466
            C+ C + GH S +C      R+
Sbjct: 474 GCFNCGEQGHRSNECPNPAKpre 496

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 413 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 583
           N  G  S    QD  +R   C+NC + GH S +CP  + E++   CY C  PGH +RDC 
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298

Query: 584 DE 589
           +E
Sbjct: 299 EE 300

>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
          Length = 763

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
 Frame = +2

Query: 113 GSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQN 292
           G  +R+  CFNC   GH S +CP+                  CYNC + GH S++C+E+ 
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPR---------VCYNCQQPGHTSRECTEER 202

Query: 293 YRNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCT 445
                PR G T    G AG  +   +          G  ER  MKC+ C   GH S +C 
Sbjct: 203 ----KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP 258

Query: 446 QDGNDRQVKCYNCNKSGHMSRECPN 520
           +        C+NC + GH S ECPN
Sbjct: 259 EPPRG----CFNCGEQGHRSNECPN 279

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
 Frame = +2

Query: 239 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 418
           C+NC + GH S DC E   +   PR    CY C + GH SR C++    ER+ +  +   
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211

Query: 419 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 556
           FG  +      GND                +KC+NC   GH S ECP  +  + C+ C  
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269

Query: 557 PGHLARDC 580
            GH + +C
Sbjct: 270 QGHRSNEC 277

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 38/143 (26%), Positives = 53/143 (37%)
 Frame = +2

Query: 38  QRRLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXX 217
           +R   C+NC + GH S +C E +K    +    C+NC   GH SREC +           
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRK---EREPRVCYNCQQPGHTSRECTEERKpreGRTGG 211

Query: 218 XXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQM 397
                    N G  G       +  +     RG   C+ C   GH S  C      E   
Sbjct: 212 FGGGAGFGNNGGNDGF----GGDGGFGGGEERGPMKCFNCKGEGHRSAECP-----EPPR 262

Query: 398 KCYKCNQFGHMSRDCTQDGNDRQ 466
            C+ C + GH S +C      R+
Sbjct: 263 GCFNCGEQGHRSNECPNPAKpre 285

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
 Frame = +2

Query: 314 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 490
           GGN+ +  GE GH        G  ER   C+ C Q GH S DC +   +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190

Query: 491 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 559
            GH SREC                      NG N+                 KC+ C   
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250

Query: 560 GHLARDCSD 586
           GH + +C +
Sbjct: 251 GHRSAECPE 259

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 452 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 589
           G +R   C+NC + GH S +CP  + E++   CY C  PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201

>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
          Length = 1156

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
 Frame = +2

Query: 74  GHMSRECTENKKGG--SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 247
           G+   E ++N++G     +R   C NCG  GH+S+EC +                  C N
Sbjct: 549 GNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFP-----------CRN 597

Query: 248 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGH 427
           C + GH + DC +       PRG   C  CG  GH + +C Q      +  C  C Q GH
Sbjct: 598 CEQLGHFASDCDQPR----VPRG--PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGH 649

Query: 428 MSRDCTQDG--NDRQVKCYNCNKSGHMSRECP 517
            ++DC  +    +    C  C + GH   ECP
Sbjct: 650 FAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
 Frame = +2

Query: 38  QRRLECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXX 217
           +R   C+NCG+EGH+S+EC + K          C NC   GH + +C Q           
Sbjct: 567 ERPRGCHNCGEEGHISKECDKPK-----VPRFPCRNCEQLGHFASDCDQPRVPRG----- 616

Query: 218 XXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC-SQNGSNERQ 394
                  C NCG  GH + DC +       PRG   C  CG+ GH +++C ++    E  
Sbjct: 617 ------PCRNCGIEGHFAVDCDQP----KVPRG--PCRNCGQEGHFAKDCQNERVRMEPT 664

Query: 395 MKCYKCNQFGHMSRDCTQDGNDRQ 466
             C +C + GH   +C     D Q
Sbjct: 665 EPCRRCAEEGHWGYECPTRPKDLQ 688

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 308 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 487
           PRG   C+ CGE GHIS+ C +      +  C  C Q GH + DC Q    R   C NC 
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622

Query: 488 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 589
             GH + +C   +  +  C  C   GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 449 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 580
           DG +R   C+NC + GH+S+EC   +  +  C  C   GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,789,507
Number of Sequences: 369166
Number of extensions: 1487382
Number of successful extensions: 9682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7180
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_011_O11
2. Dr_sW_028_F23
3. Dr_sW_005_M15
4. Dr_sW_008_F03
5. Dr_sW_009_H21
6. Dr_sW_006_B06
7. Dr_sW_004_I15
8. Dr_sW_016_F05
9. Dr_sW_023_L21
10. Dr_sW_009_B22
11. Dr_sW_021_N06
12. Dr_sW_021_B19
13. Dr_sW_012_L18