Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_I15
(582 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 169 5e-42
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 157 2e-38
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 140 3e-33
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 138 9e-33
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 138 9e-33
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 136 4e-32
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 112 7e-25
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 92 9e-19
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 84 3e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 76 5e-14
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 169 bits (428), Expect = 5e-42
Identities = 90/207 (43%), Positives = 111/207 (53%), Gaps = 29/207 (14%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGA--CFNCGLSGHMSRECPQXXXXXXXXXXXXXX 180
C+ CG+EGHMSREC + G+ +GA CF CG +GHMSR+CP
Sbjct: 45 CFRCGEEGHMSRECPNEARSGA---AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFE--- 98
Query: 181 XXVTCYNCGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEAGHISRN 318
CY CG+ GHLS+DC Q S +GG TCYKCG+AGHISR+
Sbjct: 99 ----CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRD 154
Query: 319 C--SQNG-SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRECP 471
C Q G S CYKC GH+SRDC DR KCY C +SGHMSRECP
Sbjct: 155 CPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGHMSRECP 212
Query: 472 N----GQNEKKCYKCNNPGHLARDCSD 540
+ G ++ CYKC PGH++R+C +
Sbjct: 213 SAGSTGSGDRACYKCGKPGHISRECPE 239
Score = 162 bits (409), Expect = 7e-40
Identities = 83/203 (40%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXX 180
+ C+ CG+ GHMSR+C + K G+ + C+ CG GH+SR+CP
Sbjct: 70 MTCFRCGEAGHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128
Query: 181 XXV---------TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQ 327
TCY CG++GH+S+DC S G TCYKCG+AGHISR+C Q
Sbjct: 129 RSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQ 187
Query: 328 NG-SNERQMKCYKCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN------ 474
G S KCYKC + GHMSR+C G+ DR CY C K GH+SRECP
Sbjct: 188 GGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYG 245
Query: 475 ---GQNEKKCYKCNNPGHLARDC 534
G ++ CYKC GH++RDC
Sbjct: 246 GSRGGGDRTCYKCGEAGHISRDC 268
Score = 144 bits (362), Expect = 2e-34
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
Frame = +1
Query: 49 TENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSK 228
TE+ K + S +C NCG GH +RECP+ TC+ CGE GH+S+
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPE-------ADSKGDERSTTCFRCGEEGHMSR 56
Query: 229 DCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC-- 396
+C N S G TC++CGEAGH+SR+C S + +CYKC Q GH+SRDC
Sbjct: 57 EC--PNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPS 114
Query: 397 -----------------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCN 507
Q G CY C +GH+SR+CPNGQ ++ CYKC
Sbjct: 115 SQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCG 174
Query: 508 NPGHLARDC 534
+ GH++RDC
Sbjct: 175 DAGHISRDC 183
Score = 48.9 bits (115), Expect = 9e-06
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 385 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE-----KKCYKCNNPGHLARDCSDE 543
+ D + + C NC K GH +RECP ++ C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 157 bits (396), Expect = 2e-38
Identities = 74/185 (40%), Positives = 95/185 (51%), Gaps = 8/185 (4%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
CYNCG+ GH +RECT + C+NC +GH + EC +
Sbjct: 19 CYNCGENGHQARECT---------KGSICYNCNQTGHKASECTEPQQEK----------- 58
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNE 342
TCY CG +GHL +DC + PR G CYKCG GHI+R+C N G +
Sbjct: 59 -TCYACGTAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHR 113
Query: 343 RQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHL 522
M CY C +GH +RDCT VKCY+C K GH S EC + + CYKCN PGH+
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHI 168
Query: 523 ARDCS 537
A +C+
Sbjct: 169 AVNCT 173
Score = 90.5 bits (223), Expect = 3e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 265 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 444
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 445 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 534
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 77.8 bits (190), Expect = 2e-14
Identities = 45/132 (34%), Positives = 59/132 (44%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX 183
ECY CG+ GH++R+C N Q+SG F GH S
Sbjct: 84 ECYKCGRVGHIARDCRTN-----GQQSGGRF----GGHRSN------------------- 115
Query: 184 XVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYK 363
+ CY CG GH ++DC+ G CY CG+ GH S C Q + CYK
Sbjct: 116 -MNCYACGSYGHQARDCTM----------GVKCYSCGKIGHRSFECQQASDGQ---LCYK 161
Query: 364 CNQFGHMSRDCT 399
CNQ GH++ +CT
Sbjct: 162 CNQPGHIAVNCT 173
Score = 52.8 bits (125), Expect = 6e-07
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXX 180
+ CY CG GH +R+CT K C++CG GH S EC Q
Sbjct: 116 MNCYACGSYGHQARDCTMGVK---------CYSCGKIGHRSFECQQASDGQ--------- 157
Query: 181 XXVTCYNCGESGHLSKDCS 237
CY C + GH++ +C+
Sbjct: 158 ---LCYKCNQPGHIAVNCT 173
Score = 49.3 bits (116), Expect = 7e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 424 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 540
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 140 bits (352), Expect = 3e-33
Identities = 67/194 (34%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRS--------------GACFNCGLSGHMSRECPQX 141
EC+ CG+ GH +REC G RS C+ CG SGH++++C
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC--- 61
Query: 142 XXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 321
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 62 ----------DLQEDKACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDC 106
Query: 322 SQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYK 501
+ + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +E CY+
Sbjct: 107 ----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTSEVNCYR 155
Query: 502 CNNPGHLARDCSDE 543
C GHLAR+C+ E
Sbjct: 156 CGESGHLARECTIE 169
Score = 85.9 bits (211), Expect = 7e-17
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Frame = +1
Query: 274 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------CYKCNQFGHMSRDCTQ 402
N C+KCG GH +R C R M+ CY+C + GH+++DC
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63
Query: 403 DGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 534
CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 ---QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 43.5 bits (101), Expect = 4e-04
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSREC 132
++CY CG+ GH++ C++ + C+ CG SGH++REC
Sbjct: 130 VKCYRCGETGHVAINCSKTSEVN-------CYRCGESGHLAREC 166
Score = 33.1 bits (74), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECT 51
+ CY CG+ GH++RECT
Sbjct: 151 VNCYRCGESGHLARECT 167
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 138 bits (348), Expect = 9e-33
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 123
EC+ CG+ GH +REC G RS C+ CG SGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 124 RECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAG 303
++C CYNCG GH++KDC E CY CG+ G
Sbjct: 65 KDC-------------DLQEDEACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPG 106
Query: 304 HISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQN 483
H++R+C + + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +
Sbjct: 107 HLARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTS 155
Query: 484 EKKCYKCNNPGHLARDCSDE 543
E CY+C GHLAR+C+ E
Sbjct: 156 EVNCYRCGESGHLARECTIE 175
Score = 89.0 bits (219), Expect = 8e-18
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
Frame = +1
Query: 274 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 384
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 385 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 534
++DC ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 43.5 bits (101), Expect = 4e-04
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSREC 132
++CY CG+ GH++ C++ + C+ CG SGH++REC
Sbjct: 136 VKCYRCGETGHVAINCSKTSEVN-------CYRCGESGHLAREC 172
Score = 33.1 bits (74), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECT 51
+ CY CG+ GH++RECT
Sbjct: 157 VNCYRCGESGHLARECT 173
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 138 bits (348), Expect = 9e-33
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 123
EC+ CG+ GH +REC G RS C+ CG SGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 124 RECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAG 303
++C CYNCG GH++KDC E CY CG+ G
Sbjct: 65 KDCDLQED--------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPG 105
Query: 304 HISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQN 483
H++R+C + + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +
Sbjct: 106 HLARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTS 154
Query: 484 EKKCYKCNNPGHLARDCSDE 543
E CY+C GHLAR+C+ E
Sbjct: 155 EVNCYRCGESGHLARECTIE 174
Score = 88.2 bits (217), Expect = 1e-17
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +1
Query: 274 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 384
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 385 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 534
++DC + ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 43.5 bits (101), Expect = 4e-04
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSREC 132
++CY CG+ GH++ C++ + C+ CG SGH++REC
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVN-------CYRCGESGHLAREC 171
Score = 33.1 bits (74), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECT 51
+ CY CG+ GH++RECT
Sbjct: 156 VNCYRCGESGHLARECT 172
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 136 bits (342), Expect = 4e-32
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
CY CGK GH++ +C + C+NC GH+ +C
Sbjct: 6 CYVCGKIGHLAEDCDSER---------LCYNCNKPGHVQTDCTMPRTVEFKQ-------- 48
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCY 360
CYNCGE+GH+ +C+ Q C+ C + GHISR C + R ++ CY
Sbjct: 49 --CYNCGETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 361 KCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 534
KC HM++DC ++ +KCY C ++GHMSR+C QN++ CY CN GH+++DC
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 119 bits (298), Expect = 5e-27
Identities = 58/155 (37%), Positives = 85/155 (54%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
CYNC K GH+ +CT + Q C+NCG +GH+ EC
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQR-------------- 66
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 366
C+NC ++GH+S++C E + ++ +CYKCG H++++C + +KCY C
Sbjct: 67 --CFNCNQTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTC 121
Query: 367 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECP 471
Q GHMSRDC NDR CYNCN++GH+S++CP
Sbjct: 122 GQAGHMSRDCQ---NDRL--CYNCNETGHISKDCP 151
Score = 107 bits (267), Expect = 2e-23
Identities = 52/131 (39%), Positives = 72/131 (54%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX 183
+CYNCG+ GH+ ECT + CFNC +GH+SRECP+
Sbjct: 48 QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPE-------PKKTSRFS 90
Query: 184 XVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYK 363
V+CY CG H++KDC +++ G CY CG+AGH+SR+C N+R CY
Sbjct: 91 KVSCYKCGGPNHMAKDCMKED-----GISGLKCYTCGQAGHMSRDC----QNDR--LCYN 139
Query: 364 CNQFGHMSRDC 396
CN+ GH+S+DC
Sbjct: 140 CNETGHISKDC 150
Score = 103 bits (256), Expect = 4e-22
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 88 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPR 267
AC+ CG GH++ +C CYNC + GH+ DC+ PR
Sbjct: 5 ACYVCGKIGHLAEDCDSERL---------------CYNCNKPGHVQTDCT-------MPR 42
Query: 268 GGN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCY 432
CY CGE GH+ C+ +C+ CNQ GH+SR+C + + V CY
Sbjct: 43 TVEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 433 NCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 543
C HM+++C +G + KCY C GH++RDC ++
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 63.5 bits (153), Expect = 4e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 346 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 519
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 520 LARDCS 537
+ +C+
Sbjct: 58 VRSECT 63
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXX 180
+ CY CG HM+++C + + G S + C+ CG +GHMSR+C
Sbjct: 92 VSCYKCGGPNHMAKDCMK-EDGISGLK---CYTCGQAGHMSRDCQNDR------------ 135
Query: 181 XXVTCYNCGESGHLSKDC 234
CYNC E+GH+SKDC
Sbjct: 136 ---LCYNCNETGHISKDC 150
Score = 51.6 bits (122), Expect = 1e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQ 138
L+CY CG+ GHMSR+C Q C+NC +GH+S++CP+
Sbjct: 116 LKCYTCGQAGHMSRDC---------QNDRLCYNCNETGHISKDCPK 152
Score = 31.2 bits (69), Expect = 2.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 481 NEKKCYKCNNPGHLARDCSDE 543
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 112 bits (280), Expect = 7e-25
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Frame = +1
Query: 94 FNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV-------TCYNCGESGHLSKDCSEQNYR 252
F CG SGH +R CP+ TCY CGESG +K+C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLL--- 63
Query: 253 NSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 432
GN CY CG +GHI+++C ++ ER+ CY C + GH++RDC + ++ KCY
Sbjct: 64 ------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQ---KEQKCY 113
Query: 433 NCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 537
+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 114 SCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 101 bits (252), Expect = 1e-21
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Frame = +1
Query: 10 YNCGKEGHMSRECTENKKGG-------------SNQRSGACFNCGLSGHMSRECPQXXXX 150
+ CG GH +R C GG S S C+ CG SG ++ C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI 66
Query: 151 XXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN 330
CYNCG SGH++KDC + CY CG GH++R+C +
Sbjct: 67 --------------CYNCGRSGHIAKDCKDPKRERR-----QHCYTCGRLGHLARDCDR- 106
Query: 331 GSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC 468
+++ KCY C + GH+ +DC QVKCY C + GH++ C
Sbjct: 107 ---QKEQKCYSCGKLGHIQKDCA------QVKCYRCGEIGHVAINC 143
Score = 87.0 bits (214), Expect = 3e-17
Identities = 40/132 (30%), Positives = 63/132 (47%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
CY CG+ G ++ C C+NCG SGH++++C
Sbjct: 47 CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKDPKRERRQH-------- 90
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 366
CY CG GHL++DC Q + CY CG+ GHI ++C+Q +KCY+C
Sbjct: 91 --CYTCGRLGHLARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRC 133
Query: 367 NQFGHMSRDCTQ 402
+ GH++ +C++
Sbjct: 134 GEIGHVAINCSK 145
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +1
Query: 283 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 462
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 463 ECPNGQNEKKCYKCNNPGHLARDCSD 540
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
Score = 39.3 bits (90), Expect = 0.007
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 4 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSREC 132
+CY+CGK GH+ ++C + K C+ CG GH++ C
Sbjct: 111 KCYSCGKLGHIQKDCAQVK----------CYRCGEIGHVAINC 143
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 92.0 bits (227), Expect = 9e-19
Identities = 62/235 (26%), Positives = 84/235 (35%), Gaps = 59/235 (25%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
C+NC + GH S +C E KK + C+NC GH SR+CP+
Sbjct: 259 CFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSS 315
Query: 187 -------------------VTCYNCGESGHLSKDCSEQNYRNSAPRGG-------NTCYK 288
N GESG S + + GG N C+
Sbjct: 316 GFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFN 375
Query: 289 CGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD----------------GND-- 414
C + GH S +C + CY C Q GH SRDC ++ GND
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGG 435
Query: 415 ---------------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 534
+KC+NC GH S ECP + + C+ C GH + +C
Sbjct: 436 FGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNEC 488
Score = 91.7 bits (226), Expect = 1e-18
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Frame = +1
Query: 76 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 255
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 301
Query: 256 SAPRGGNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSR 390
PR G + G +G N NG + + N G S
Sbjct: 302 -KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSG 360
Query: 391 DCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 543
QD +R C+NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 361 GGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 85.9 bits (211), Expect = 7e-17
Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Frame = +1
Query: 76 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 255
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 415
Query: 256 SAPRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGND 414
PR G + G + G N G+NE + MKC+ C GH S +C +
Sbjct: 416 -KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG 474
Query: 415 RQVKCYNCNKSGHMSRECPN 474
C+NC + GH S ECPN
Sbjct: 475 ----CFNCGEQGHRSNECPN 490
Score = 68.6 bits (166), Expect = 1e-11
Identities = 39/138 (28%), Positives = 56/138 (40%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
C+NC + GH S +C E KK + C+NC GH SR+CP+
Sbjct: 373 CFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGF----- 424
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 366
+ + G G +E + N+ RG C+ C GH S C E C+ C
Sbjct: 425 TSGFGGGNDGGFGGGNAE-GFGNNEERGPMKCFNCKGEGHRSAECP-----EPPRGCFNC 478
Query: 367 NQFGHMSRDCTQDGNDRQ 420
+ GH S +C R+
Sbjct: 479 GEQGHRSNECPNPAKpre 496
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 367 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 537
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 538 DE 543
+E
Sbjct: 299 EE 300
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 135
++C+NC EGH S EC E +G CFNCG GH S ECP
Sbjct: 453 MKCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 489
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 83.6 bits (205), Expect = 3e-16
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Frame = +1
Query: 67 GSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQN 246
G +R+ CFNC GH S +CP+ CYNC + GH S++C+E+
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPR---------VCYNCQQPGHTSRECTEER 202
Query: 247 YRNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCT 399
PR G T G AG + + G ER MKC+ C GH S +C
Sbjct: 203 ----KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP 258
Query: 400 QDGNDRQVKCYNCNKSGHMSRECPN 474
+ C+NC + GH S ECPN
Sbjct: 259 EPPRG----CFNCGEQGHRSNECPN 279
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +1
Query: 193 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 372
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 373 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 510
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 511 PGHLARDC 534
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 63.2 bits (152), Expect = 5e-10
Identities = 37/138 (26%), Positives = 51/138 (36%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
C+NC + GH S +C E +K + C+NC GH SREC +
Sbjct: 160 CFNCQQPGHRSSDCPEPRK---EREPRVCYNCQQPGHTSRECTEERKpreGRTGGFGGGA 216
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 366
N G G + + RG C+ C GH S C E C+ C
Sbjct: 217 GFGNNGGNDGF----GGDGGFGGGEERGPMKCFNCKGEGHRSAECP-----EPPRGCFNC 267
Query: 367 NQFGHMSRDCTQDGNDRQ 420
+ GH S +C R+
Sbjct: 268 GEQGHRSNECPNPAKpre 285
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +1
Query: 268 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 444
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 445 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 513
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 514 GHLARDCSD 540
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 6e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 406 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 543
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +1
Query: 1 LECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 135
++C+NC EGH S EC E +G CFNCG GH S ECP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 278
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 76.3 bits (186), Expect = 5e-14
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Frame = +1
Query: 28 GHMSRECTENKKGG--SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 201
G+ E ++N++G +R C NCG GH+S+EC + C N
Sbjct: 549 GNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDK-----------PKVPRFPCRN 597
Query: 202 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGH 381
C + GH + DC + PRG C CG GH + +C Q + C C Q GH
Sbjct: 598 CEQLGHFASDCDQPR----VPRG--PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGH 649
Query: 382 MSRDCTQD--GNDRQVKCYNCNKSGHMSRECP 471
++DC + + C C + GH ECP
Sbjct: 650 FAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 75.1 bits (183), Expect = 1e-13
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX 186
C+NCG+EGH+S+EC + K C NC GH + +C Q
Sbjct: 572 CHNCGEEGHISKECDKPK-----VPRFPCRNCEQLGHFASDCDQPRVPRG---------- 616
Query: 187 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC-SQNGSNERQMKCYK 363
C NCG GH + DC + PRG C CG+ GH +++C ++ E C +
Sbjct: 617 -PCRNCGIEGHFAVDCDQP----KVPRG--PCRNCGQEGHFAKDCQNERVRMEPTEPCRR 669
Query: 364 CNQFGHMSRDCTQDGNDRQ 420
C + GH +C D Q
Sbjct: 670 CAEEGHWGYECPTRPKDLQ 688
Score = 69.3 bits (168), Expect = 6e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 262 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 441
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 442 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 543
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 403 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 534
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,702,829
Number of Sequences: 369166
Number of extensions: 1379677
Number of successful extensions: 9201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6792
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)