Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N06
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 156 3e-38
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 142 6e-34
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 127 2e-29
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 125 7e-29
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 125 7e-29
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 124 1e-28
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 112 6e-25
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 92 1e-18
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 84 3e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 76 5e-14
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 156 bits (395), Expect = 3e-38
Identities = 86/200 (43%), Positives = 105/200 (52%), Gaps = 29/200 (14%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGA--CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 176
GHMSREC + G+ +GA CF CG +GHMSR+CP CY
Sbjct: 52 GHMSRECPNEARSGA---AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFE-------CYK 101
Query: 177 CGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEAGHISRNC--SQNG 308
CG+ GHLS+DC Q S +GG TCYKCG+AGHISR+C Q G
Sbjct: 102 CGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGG 161
Query: 309 -SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRECPN----GQ 455
S CYKC GH+SRDC DR KCY C +SGHMSRECP+ G
Sbjct: 162 YSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGHMSRECPSAGSTGS 219
Query: 456 NEKKCYKCNNPGHLARDCSD 515
++ CYKC PGH++R+C +
Sbjct: 220 GDRACYKCGKPGHISRECPE 239
Score = 151 bits (381), Expect = 1e-36
Identities = 80/194 (41%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV------ 164
GHMSR+C + K G+ + C+ CG GH+SR+CP
Sbjct: 79 GHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYS 137
Query: 165 ---TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNG-SNERQM 326
TCY CG++GH+S+DC S G TCYKCG+AGHISR+C Q G S
Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 196
Query: 327 KCYKCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN---------GQNEKK 467
KCYKC + GHMSR+C G+ DR CY C K GH+SRECP G ++
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYGGSRGGGDRT 254
Query: 468 CYKCNNPGHLARDC 509
CYKC GH++RDC
Sbjct: 255 CYKCGEAGHISRDC 268
Score = 144 bits (362), Expect = 2e-34
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
Frame = +3
Query: 24 TENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSK 203
TE+ K + S +C NCG GH +RECP+ TC+ CGE GH+S+
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPE-------ADSKGDERSTTCFRCGEEGHMSR 56
Query: 204 DCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC-- 371
+C N S G TC++CGEAGH+SR+C S + +CYKC Q GH+SRDC
Sbjct: 57 EC--PNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPS 114
Query: 372 -----------------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCN 482
Q G CY C +GH+SR+CPNGQ ++ CYKC
Sbjct: 115 SQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCG 174
Query: 483 NPGHLARDC 509
+ GH++RDC
Sbjct: 175 DAGHISRDC 183
Score = 48.9 bits (115), Expect = 8e-06
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 360 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE-----KKCYKCNNPGHLARDCSDE 518
+ D + + C NC K GH +RECP ++ C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 142 bits (358), Expect = 6e-34
Identities = 69/178 (38%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 182
GH +RECT + C+NC +GH + EC + TCY CG
Sbjct: 26 GHQARECT---------KGSICYNCNQTGHKASECTEPQQEK------------TCYACG 64
Query: 183 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNERQMKCYK 338
+GHL +DC + PR G CYKCG GHI+R+C N G + M CY
Sbjct: 65 TAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYA 120
Query: 339 CNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 512
C +GH +RDCT VKCY+C K GH S EC + + CYKCN PGH+A +C+
Sbjct: 121 CGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 90.5 bits (223), Expect = 3e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +3
Query: 240 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 419
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 420 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 509
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 49.3 bits (116), Expect = 6e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 399 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 515
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 127 bits (319), Expect = 2e-29
Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 14/186 (7%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGA--------------CFNCGLSGHMSRECPQXXXXXXXXX 140
GH +REC G RS C+ CG SGH++++C
Sbjct: 13 GHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDK----- 67
Query: 141 XXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER 320
CYNCG GH++KDC E CY CG+ GH++R+C +
Sbjct: 68 --------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD----HAD 110
Query: 321 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLA 500
+ KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLA
Sbjct: 111 EQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLA 163
Query: 501 RDCSDE 518
R+C+ E
Sbjct: 164 RECTIE 169
Score = 103 bits (257), Expect = 3e-22
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Frame = +3
Query: 168 CYNCGESGHLSKDCSEQNYRN----SAPRGG---------NTCYKCGEAGHISRNCSQNG 308
C+ CG +GH +++C R S R G + CY+CGE+GH++++C
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL-- 63
Query: 309 SNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNP 488
+ CY C + GH+++DC + +R+ CYNC K GH++R+C + +E+KCY C
Sbjct: 64 --QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKCYSCGEF 120
Query: 489 GHLARDCS 512
GH+ +DC+
Sbjct: 121 GHIQKDCT 128
Score = 85.9 bits (211), Expect = 6e-17
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Frame = +3
Query: 249 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------CYKCNQFGHMSRDCTQ 377
N C+KCG GH +R C R M+ CY+C + GH+++DC
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63
Query: 378 DGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 509
CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 ---QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 125 bits (314), Expect = 7e-29
Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 20/192 (10%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGA--------------------CFNCGLSGHMSRECPQXXX 122
GH +REC G RS C+ CG SGH++++C
Sbjct: 13 GHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 123 XXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ 302
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 73 E-------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD- 113
Query: 303 NGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCN 482
+ + KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C
Sbjct: 114 ---HADEQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCG 163
Query: 483 NPGHLARDCSDE 518
GHLAR+C+ E
Sbjct: 164 ESGHLARECTIE 175
Score = 89.0 bits (219), Expect = 7e-18
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 359
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 360 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 509
++DC ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 125 bits (314), Expect = 7e-29
Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 20/192 (10%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGA--------------------CFNCGLSGHMSRECPQXXX 122
GH +REC G RS C+ CG SGH++++C
Sbjct: 13 GHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 72
Query: 123 XXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ 302
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 73 --------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD- 112
Query: 303 NGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCN 482
+ + KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C
Sbjct: 113 ---HADEQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCG 162
Query: 483 NPGHLARDCSDE 518
GHLAR+C+ E
Sbjct: 163 ESGHLARECTIE 174
Score = 88.2 bits (217), Expect = 1e-17
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +3
Query: 249 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 359
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 360 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 509
++DC + ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 124 bits (312), Expect = 1e-28
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 2/171 (1%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 182
GH++ +C + C+NC GH+ +C CYNCG
Sbjct: 13 GHLAEDCDSER---------LCYNCNKPGHVQTDCTMPRTVEFKQ----------CYNCG 53
Query: 183 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCYKCNQFGH 356
E+GH+ +C+ Q C+ C + GHISR C + R ++ CYKC H
Sbjct: 54 ETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNH 102
Query: 357 MSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 509
M++DC ++ +KCY C ++GHMSR+C QN++ CY CN GH+++DC
Sbjct: 103 MAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 105 bits (263), Expect = 6e-23
Identities = 53/148 (35%), Positives = 80/148 (54%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 182
GH+ +CT + Q C+NCG +GH+ EC C+NC
Sbjct: 32 GHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQR----------------CFNCN 71
Query: 183 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMS 362
++GH+S++C E + ++ +CYKCG H++++C + +KCY C Q GHMS
Sbjct: 72 QTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTCGQAGHMS 128
Query: 363 RDCTQDGNDRQVKCYNCNKSGHMSRECP 446
RDC NDR CYNCN++GH+S++CP
Sbjct: 129 RDCQ---NDRL--CYNCNETGHISKDCP 151
Score = 103 bits (256), Expect = 4e-22
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +3
Query: 63 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPR 242
AC+ CG GH++ +C CYNC + GH+ DC+ PR
Sbjct: 5 ACYVCGKIGHLAEDCDSERL---------------CYNCNKPGHVQTDCT-------MPR 42
Query: 243 GGN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCY 407
CY CGE GH+ C+ +C+ CNQ GH+SR+C + + V CY
Sbjct: 43 TVEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 408 NCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 518
C HM+++C +G + KCY C GH++RDC ++
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 321 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 494
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 495 LARDCS 512
+ +C+
Sbjct: 58 VRSECT 63
Score = 37.7 bits (86), Expect = 0.019
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQ 113
GHMSR+C Q C+NC +GH+S++CP+
Sbjct: 125 GHMSRDC---------QNDRLCYNCNETGHISKDCPK 152
Score = 31.2 bits (69), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 456 NEKKCYKCNNPGHLARDCSDE 518
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 112 bits (280), Expect = 6e-25
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Frame = +3
Query: 69 FNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV-------TCYNCGESGHLSKDCSEQNYR 227
F CG SGH +R CP+ TCY CGESG +K+C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLL--- 63
Query: 228 NSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 407
GN CY CG +GHI+++C ++ ER+ CY C + GH++RDC + ++ KCY
Sbjct: 64 ------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQ---KEQKCY 113
Query: 408 NCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 512
+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 114 SCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 95.9 bits (237), Expect = 6e-20
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Frame = +3
Query: 3 GHMSRECTENKKGG-------------SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXX 143
GH +R C GG S S C+ CG SG ++ C
Sbjct: 13 GHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI------ 66
Query: 144 XXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQ 323
CYNCG SGH++KDC + CY CG GH++R+C + +++
Sbjct: 67 --------CYNCGRSGHIAKDCKDPKRERR-----QHCYTCGRLGHLARDCDR----QKE 109
Query: 324 MKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC 443
KCY C + GH+ +DC QVKCY C + GH++ C
Sbjct: 110 QKCYSCGKLGHIQKDCA------QVKCYRCGEIGHVAINC 143
Score = 79.3 bits (194), Expect = 6e-15
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +3
Query: 21 CTENKKGGSN--QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGH 194
C E+ + N C+NCG SGH++++C CY CG GH
Sbjct: 50 CGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQH----------CYTCGRLGH 99
Query: 195 LSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCT 374
L++DC Q + CY CG+ GHI ++C+Q +KCY+C + GH++ +C+
Sbjct: 100 LARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRCGEIGHVAINCS 144
Query: 375 Q 377
+
Sbjct: 145 K 145
Score = 68.9 bits (167), Expect = 8e-12
Identities = 31/100 (31%), Positives = 52/100 (52%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 182
GH++++C + K+ +R C+ CG GH++R+C + CY+CG
Sbjct: 74 GHIAKDCKDPKR----ERRQHCYTCGRLGHLARDCDRQKEQK-------------CYSCG 116
Query: 183 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ 302
+ GH+ KDC++ CY+CGE GH++ NCS+
Sbjct: 117 KLGHIQKDCAQVK-----------CYRCGEIGHVAINCSK 145
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +3
Query: 258 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 437
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 438 ECPNGQNEKKCYKCNNPGHLARDCSD 515
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 91.7 bits (226), Expect = 1e-18
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Frame = +3
Query: 51 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 230
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 301
Query: 231 SAPRGGNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSR 365
PR G + G +G N NG + + N G S
Sbjct: 302 -KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSG 360
Query: 366 DCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 518
QD +R C+NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 361 GGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 85.9 bits (211), Expect = 6e-17
Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Frame = +3
Query: 51 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 230
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 415
Query: 231 SAPRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGND 389
PR G + G + G N G+NE + MKC+ C GH S +C +
Sbjct: 416 -KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG 474
Query: 390 RQVKCYNCNKSGHMSRECPN 449
C+NC + GH S ECPN
Sbjct: 475 ----CFNCGEQGHRSNECPN 490
Score = 82.4 bits (202), Expect = 7e-16
Identities = 59/228 (25%), Positives = 79/228 (34%), Gaps = 59/228 (25%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX------- 161
GH S +C E KK + C+NC GH SR+CP+
Sbjct: 266 GHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNG 322
Query: 162 ------------VTCYNCGESGHLSKDCSEQNYRNSAPRGG-------NTCYKCGEAGHI 284
N GESG S + + GG N C+ C + GH
Sbjct: 323 GGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHR 382
Query: 285 SRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD----------------GND--------- 389
S +C + CY C Q GH SRDC ++ GND
Sbjct: 383 SNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAE 442
Query: 390 --------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 509
+KC+NC GH S ECP + + C+ C GH + +C
Sbjct: 443 GFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNEC 488
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 342 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 512
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 513 DE 518
+E
Sbjct: 299 EE 300
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 83.6 bits (205), Expect = 3e-16
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Frame = +3
Query: 42 GSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQN 221
G +R+ CFNC GH S +CP+ CYNC + GH S++C+E+
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPR---------VCYNCQQPGHTSRECTEER 202
Query: 222 YRNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCT 374
PR G T G AG + + G ER MKC+ C GH S +C
Sbjct: 203 ----KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP 258
Query: 375 QDGNDRQVKCYNCNKSGHMSRECPN 449
+ C+NC + GH S ECPN
Sbjct: 259 EPPRG----CFNCGEQGHRSNECPN 279
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +3
Query: 168 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 347
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 348 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 485
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 486 PGHLARDC 509
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +3
Query: 243 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 419
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 420 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 488
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 489 GHLARDCSD 515
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 5e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 381 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 518
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/98 (30%), Positives = 38/98 (38%)
Frame = +3
Query: 3 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 182
GH SRECTE +K + G G + + + C+NC
Sbjct: 192 GHTSRECTEERKpreGRTGGFGGGAGFGNNGGND---GFGGDGGFGGGEERGPMKCFNCK 248
Query: 183 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 296
GH S +C E PRG C+ CGE GH S C
Sbjct: 249 GEGHRSAECPE------PPRG---CFNCGEQGHRSNEC 277
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 76.3 bits (186), Expect = 5e-14
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Frame = +3
Query: 3 GHMSRECTENKKGG--SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 176
G+ E ++N++G +R C NCG GH+S+EC + C N
Sbjct: 549 GNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDK-----------PKVPRFPCRN 597
Query: 177 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGH 356
C + GH + DC + PRG C CG GH + +C Q + C C Q GH
Sbjct: 598 CEQLGHFASDCDQPR----VPRG--PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGH 649
Query: 357 MSRDCTQD--GNDRQVKCYNCNKSGHMSRECP 446
++DC + + C C + GH ECP
Sbjct: 650 FAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 71.6 bits (174), Expect = 1e-12
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +3
Query: 168 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 347
C+NCGE GH+SK+C + PR C C + GH + +C Q + C C
Sbjct: 572 CHNCGEEGHISKECD----KPKVPR--FPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGI 623
Query: 348 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNG----QNEKKCYKCNNPGHLARDC 509
GH + DC Q R C NC + GH +++C N + + C +C GH +C
Sbjct: 624 EGHFAVDCDQPKVPRG-PCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 69.3 bits (168), Expect = 6e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 237 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 416
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 417 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 518
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 378 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 509
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,485,581
Number of Sequences: 369166
Number of extensions: 1296889
Number of successful extensions: 6804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5546
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)