Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_F05
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 127 8e-30
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 124 5e-29
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 114 7e-26
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 112 2e-25
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 112 2e-25
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 112 2e-25
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 105 4e-23
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 77 2e-14
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 74 1e-13
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 72 5e-13
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 127 bits (319), Expect = 8e-30
Identities = 63/131 (48%), Positives = 77/131 (58%), Gaps = 16/131 (12%)
Frame = +1
Query: 4 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNG-SNERQMKCY 174
TCY CG++GH+S+DC S G TCYKCG+AGHISR+C Q G S KCY
Sbjct: 141 TCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCY 199
Query: 175 KCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN---------GQNEKKCYK 315
KC + GHMSR+C G+ DR CY C K GH+SRECP G ++ CYK
Sbjct: 200 KCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYK 257
Query: 316 CNNPGHLARDC 348
C GH++RDC
Sbjct: 258 CGEAGHISRDC 268
Score = 126 bits (317), Expect = 1e-29
Identities = 65/143 (45%), Positives = 79/143 (55%), Gaps = 27/143 (18%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEAGHISRNC--S 138
CY CG+ GHLS+DC Q S +GG TCYKCG+AGHISR+C
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Query: 139 QNG-SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRECPN--- 288
Q G S CYKC GH+SRDC DR KCY C +SGHMSRECP+
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGHMSRECPSAGS 216
Query: 289 -GQNEKKCYKCNNPGHLARDCSD 354
G ++ CYKC PGH++R+C +
Sbjct: 217 TGSGDRACYKCGKPGHISRECPE 239
Score = 117 bits (294), Expect = 6e-27
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 33/149 (22%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRG---GNTCYKCGEAGHISRNC--SQNGSN---- 153
+TC+ CGE+GH+S+DC NSA G G CYKCG+ GH+SR+C SQ GS
Sbjct: 70 MTCFRCGEAGHMSRDCP-----NSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYG 124
Query: 154 ------------ERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRE 279
CYKC GH+SRDC DR CY C +GH+SR+
Sbjct: 125 QKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--TCYKCGDAGHISRD 182
Query: 280 CPNGQ------NEKKCYKCNNPGHLARDC 348
CPNGQ ++KCYKC GH++R+C
Sbjct: 183 CPNGQGGYSGAGDRKCYKCGESGHMSREC 211
Score = 108 bits (270), Expect = 4e-24
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 26/141 (18%)
Frame = +1
Query: 4 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQ--MKCYK 177
+C NCG+ GH +++C E + + TC++CGE GH+SR C + M C++
Sbjct: 17 SCRNCGKEGHYARECPEADSKGD--ERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFR 74
Query: 178 CNQFGHMSRDC---TQDGNDRQVKCYNCNKSGHMSRECPNGQ------------------ 294
C + GHMSRDC + G + +CY C + GH+SR+CP+ Q
Sbjct: 75 CGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQG 134
Query: 295 ---NEKKCYKCNNPGHLARDC 348
++ CYKC + GH++RDC
Sbjct: 135 GYSGDRTCYKCGDAGHISRDC 155
Score = 98.2 bits (243), Expect = 5e-21
Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 10/105 (9%)
Frame = +1
Query: 4 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSN-ERQMKCYKC 180
TCY CG++GH+S+DC S G CYKCGE+GH+SR C GS CYKC
Sbjct: 169 TCYKCGDAGHISRDCPNGQGGYSGA-GDRKCYKCGESGHMSRECPSAGSTGSGDRACYKC 227
Query: 181 NQFGHMSRDC---------TQDGNDRQVKCYNCNKSGHMSRECPN 288
+ GH+SR+C ++ G DR CY C ++GH+SR+CP+
Sbjct: 228 GKPGHISRECPEAGGSYGGSRGGGDRT--CYKCGEAGHISRDCPS 270
Score = 89.7 bits (221), Expect = 2e-18
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Frame = +1
Query: 55 QNYRNSAPRGGNTCYKCGEAGHISRNCSQNGS--NERQMKCYKCNQFGHMSRDC---TQD 219
++ + +C CG+ GH +R C + S +ER C++C + GHMSR+C +
Sbjct: 5 EDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARS 64
Query: 220 GNDRQVKCYNCNKSGHMSRECPNGQNEK-----KCYKCNNPGHLARDC 348
G + C+ C ++GHMSR+CPN +CYKC GHL+RDC
Sbjct: 65 GAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 48.9 bits (115), Expect = 4e-06
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 199 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNG-----QNEKKCYKCNNPGHLARDCSDE 357
+ D + + C NC K GH +RECP + C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 124 bits (312), Expect = 5e-29
Identities = 56/124 (45%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Frame = +1
Query: 4 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNER 159
TCY CG +GHL +DC + PR G CYKCG GHI+R+C N G +
Sbjct: 59 TCYACGTAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRS 114
Query: 160 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLA 339
M CY C +GH +RDCT VKCY+C K GH S EC + + CYKCN PGH+A
Sbjct: 115 NMNCYACGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIA 169
Query: 340 RDCS 351
+C+
Sbjct: 170 VNCT 173
Score = 90.5 bits (223), Expect = 1e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 79 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 258
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 259 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 348
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 60.1 bits (144), Expect = 2e-09
Identities = 28/71 (39%), Positives = 37/71 (52%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 180
+ CY CG GH ++DC+ G CY CG+ GH S C Q + CYKC
Sbjct: 116 MNCYACGSYGHQARDCTM----------GVKCYSCGKIGHRSFECQQASDGQ---LCYKC 162
Query: 181 NQFGHMSRDCT 213
NQ GH++ +CT
Sbjct: 163 NQPGHIAVNCT 173
Score = 49.3 bits (116), Expect = 3e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 238 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 354
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 114 bits (285), Expect = 7e-26
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCYKC 180
CYNCGE+GH+ +C+ Q C+ C + GHISR C + R ++ CYKC
Sbjct: 49 CYNCGETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCYKC 97
Query: 181 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 348
HM++DC ++ +KCY C ++GHMSR+C QN++ CY CN GH+++DC
Sbjct: 98 GGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 101 bits (252), Expect = 5e-22
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
CY CG+ GHL++DC + CY C + GH+ +C+ + E + +CY C +
Sbjct: 6 CYVCGKIGHLAEDCDSERL----------CYNCNKPGHVQTDCTMPRTVEFK-QCYNCGE 54
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK-----CYKCNNPGHLARDCS 351
GH+ +CT +C+NCN++GH+SRECP + + CYKC P H+A+DC
Sbjct: 55 TGHVRSECTVQ------RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCM 108
Query: 352 DE 357
E
Sbjct: 109 KE 110
Score = 92.0 bits (227), Expect = 4e-19
Identities = 40/93 (43%), Positives = 61/93 (65%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
C+NC ++GH+S++C E + ++ +CYKCG H++++C + +KCY C Q
Sbjct: 67 CFNCNQTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTCGQ 123
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECP 285
GHMSRDC NDR CYNCN++GH+S++CP
Sbjct: 124 AGHMSRDCQ---NDRL--CYNCNETGHISKDCP 151
Score = 69.3 bits (168), Expect = 3e-12
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 180
V+CY CG H++KDC +++ G CY CG+AGH+SR+C N+R CY C
Sbjct: 92 VSCYKCGGPNHMAKDCMKED-----GISGLKCYTCGQAGHMSRDC----QNDR--LCYNC 140
Query: 181 NQFGHMSRDC 210
N+ GH+S+DC
Sbjct: 141 NETGHISKDC 150
Score = 63.5 bits (153), Expect = 1e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 160 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 333
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 334 LARDCS 351
+ +C+
Sbjct: 58 VRSECT 63
Score = 31.2 bits (69), Expect = 0.78
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 295 NEKKCYKCNNPGHLARDCSDE 357
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 112 bits (281), Expect = 2e-25
Identities = 48/117 (41%), Positives = 68/117 (58%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
CYNCG GH++KDC E CY CG+ GH++R+C + + KCY C +
Sbjct: 75 CYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD----HADEQKCYSCGE 125
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSDE 357
FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+C+ E
Sbjct: 126 FGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLARECTIE 175
Score = 106 bits (264), Expect = 2e-23
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 19/134 (14%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRN----SAPRGGNT---------------CYKCGEAGHISR 129
C+ CG SGH +++C R S RGG T CY+CGE+GH+++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 130 NCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKC 309
+C + CY C + GH+++DC + +R+ CYNC K GH++R+C + +E+KC
Sbjct: 66 DCDL----QEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKC 120
Query: 310 YKCNNPGHLARDCS 351
Y C GH+ +DC+
Sbjct: 121 YSCGEFGHIQKDCT 134
Score = 89.0 bits (219), Expect = 3e-18
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
Frame = +1
Query: 88 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 198
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 199 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 348
++DC ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 51.2 bits (121), Expect = 7e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCS 138
V CY CGE+GH++ +CS+ + N CY+CGE+GH++R C+
Sbjct: 136 VKCYRCGETGHVAINCSKTSEVN--------CYRCGESGHLARECT 173
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 112 bits (281), Expect = 2e-25
Identities = 48/117 (41%), Positives = 68/117 (58%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
CYNCG GH++KDC E CY CG+ GH++R+C + + KCY C +
Sbjct: 74 CYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD----HADEQKCYSCGE 124
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSDE 357
FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+C+ E
Sbjct: 125 FGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLARECTIE 174
Score = 105 bits (263), Expect = 2e-23
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 19/134 (14%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRN----SAPRGGNT---------------CYKCGEAGHISR 129
C+ CG SGH +++C R S RGG T CY+CGE+GH+++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 130 NCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKC 309
+C ++ CY C + GH+++DC + +R+ CYNC K GH++R+C + +E+KC
Sbjct: 66 DCDL-----QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKC 119
Query: 310 YKCNNPGHLARDCS 351
Y C GH+ +DC+
Sbjct: 120 YSCGEFGHIQKDCT 133
Score = 88.2 bits (217), Expect = 5e-18
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +1
Query: 88 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 198
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 199 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 348
++DC + ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 51.2 bits (121), Expect = 7e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCS 138
V CY CGE+GH++ +CS+ + N CY+CGE+GH++R C+
Sbjct: 135 VKCYRCGETGHVAINCSKTSEVN--------CYRCGESGHLARECT 172
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 112 bits (281), Expect = 2e-25
Identities = 48/117 (41%), Positives = 68/117 (58%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
CYNCG GH++KDC E CY CG+ GH++R+C + + KCY C +
Sbjct: 69 CYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD----HADEQKCYSCGE 119
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSDE 357
FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+C+ E
Sbjct: 120 FGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLARECTIE 169
Score = 103 bits (257), Expect = 1e-22
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRN----SAPRGG---------NTCYKCGEAGHISRNCSQNG 147
C+ CG +GH +++C R S R G + CY+CGE+GH++++C
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL-- 63
Query: 148 SNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNP 327
+ CY C + GH+++DC + +R+ CYNC K GH++R+C + +E+KCY C
Sbjct: 64 --QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKCYSCGEF 120
Query: 328 GHLARDCS 351
GH+ +DC+
Sbjct: 121 GHIQKDCT 128
Score = 85.9 bits (211), Expect = 3e-17
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Frame = +1
Query: 88 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------CYKCNQFGHMSRDCTQ 216
N C+KCG GH +R C R M+ CY+C + GH+++DC
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63
Query: 217 DGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 348
CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 ---QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 51.2 bits (121), Expect = 7e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCS 138
V CY CGE+GH++ +CS+ + N CY+CGE+GH++R C+
Sbjct: 130 VKCYRCGETGHVAINCSKTSEVN--------CYRCGESGHLARECT 167
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 105 bits (261), Expect = 4e-23
Identities = 47/116 (40%), Positives = 70/116 (60%)
Frame = +1
Query: 4 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCN 183
TCY CGESG +K+C GN CY CG +GHI+++C ++ ER+ CY C
Sbjct: 46 TCYCCGESGRNAKNCVLL---------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCG 95
Query: 184 QFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 351
+ GH++RDC + ++ KCY+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 96 RLGHLARDCDR---QKEQKCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Frame = +1
Query: 10 YNCGESGHLSKDCSEQNYRNSAPRGGN--------------TCYKCGEAGHISRNCSQNG 147
+ CG SGH ++ C RGG TCY CGE+G ++NC G
Sbjct: 7 FACGHSGHWARGCPRGGA--GGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLG 64
Query: 148 SNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNP 327
+ CY C + GH+++DC +R+ CY C + GH++R+C + Q E+KCY C
Sbjct: 65 NI-----CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC-DRQKEQKCYSCGKL 118
Query: 328 GHLARDCS 351
GH+ +DC+
Sbjct: 119 GHIQKDCA 126
Score = 65.9 bits (159), Expect = 3e-11
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
CY CG GHL++DC Q + CY CG+ GHI ++C+Q +KCY+C +
Sbjct: 91 CYTCGRLGHLARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRCGE 135
Query: 187 FGHMSRDCTQ 216
GH++ +C++
Sbjct: 136 IGHVAINCSK 145
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +1
Query: 97 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 276
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 277 ECPNGQNEKKCYKCNNPGHLARDCSD 354
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 1 VTCYNCGESGHLSKDCSE 54
V CY CGE GH++ +CS+
Sbjct: 128 VKCYRCGEIGHVAINCSK 145
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 76.6 bits (187), Expect = 2e-14
Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 43/160 (26%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ--------------- 141
C+NC + GH S DC E + PR CY C + GH SR+C +
Sbjct: 259 CFNCQQPGHRSNDCPEPK-KEREPR---VCYNCQQPGHNSRDCPEERKpreGRNGFTGGS 314
Query: 142 -------------------------NGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 246
NG + + N G S QD +R C+
Sbjct: 315 SGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCF 374
Query: 247 NCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 357
NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 375 NCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 71.6 bits (174), Expect = 5e-13
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN-----GSNERQMKC 171
C+NC + GH S DC E + PR CY C + GH SR+C + G N
Sbjct: 373 CFNCQQPGHRSNDCPEPK-KEREPR---VCYNCQQPGHNSRDCPEERKpreGRNGFTSGF 428
Query: 172 YKCNQFGHMSRDCTQDGNDRQ---VKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLAR 342
N G + GN+ + +KC+NC GH S ECP + + C+ C GH +
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSN 486
Query: 343 DC 348
+C
Sbjct: 487 EC 488
Score = 70.5 bits (171), Expect = 1e-12
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--M 165
CYNC + GH S+DC E+ PR G + G + G N G+NE + M
Sbjct: 398 CYNCQQPGHNSRDCPEER----KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPM 453
Query: 166 KCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPN 288
KC+ C GH S +C + C+NC + GH S ECPN
Sbjct: 454 KCFNCKGEGHRSAECPEPPRG----CFNCGEQGHRSNECPN 490
Score = 58.2 bits (139), Expect = 6e-09
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 181 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 351
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 352 DE 357
+E
Sbjct: 299 EE 300
Score = 53.9 bits (128), Expect = 1e-07
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 154 ERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNKSGHMSRECPNGQNEKK 306
ER C+ C Q GH S DC + +R+ + CYNC + GH SR+CP + ++
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpre 305
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 43/132 (32%)
Frame = +1
Query: 88 NTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK--------- 240
N C+ C + GH S +C + CY C Q GH SRDC ++ R+ +
Sbjct: 257 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSSG 316
Query: 241 ----------------------------------CYNCNKSGHMSRECPNGQNEKKCYKC 318
N N G G+ C+ C
Sbjct: 317 FGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNC 376
Query: 319 NNPGHLARDCSD 354
PGH + DC +
Sbjct: 377 QQPGHRSNDCPE 388
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 73.6 bits (179), Expect = 1e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 187 FGHMSRDCTQDGND--------------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 324
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 325 PGHLARDC 348
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER- 159
CYNC + GH S++C+E+ PR G T G AG + + G ER
Sbjct: 185 CYNCQQPGHTSRECTEER----KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERG 240
Query: 160 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPN 288
MKC+ C GH S +C + C+NC + GH S ECPN
Sbjct: 241 PMKCFNCKGEGHRSAECPEPPRG----CFNCGEQGHRSNECPN 279
Score = 61.2 bits (147), Expect = 7e-10
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +1
Query: 82 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 258
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 259 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 327
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 328 GHLARDCSD 354
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 2e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 220 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 357
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 71.6 bits (174), Expect = 5e-13
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +1
Query: 7 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 186
C+NCGE GH+SK+C + PR C C + GH + +C Q + C C
Sbjct: 572 CHNCGEEGHISKECD----KPKVPR--FPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGI 623
Query: 187 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNG----QNEKKCYKCNNPGHLARDC 348
GH + DC Q R C NC + GH +++C N + + C +C GH +C
Sbjct: 624 EGHFAVDCDQPKVPRG-PCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 69.3 bits (168), Expect = 3e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 76 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 255
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 256 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 357
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 154 ERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPG 330
ER C+ C + GH+S++C + R C NC + GH + +C + + C C G
Sbjct: 567 ERPRGCHNCGEEGHISKECDKPKVPR-FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEG 625
Query: 331 HLARDC 348
H A DC
Sbjct: 626 HFAVDC 631
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 348
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,425,359
Number of Sequences: 369166
Number of extensions: 1008115
Number of successful extensions: 5611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4581
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)