Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H21
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 159 6e-39
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 142 4e-34
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 127 1e-29
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 126 4e-29
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 126 4e-29
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 125 7e-29
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 112 6e-25
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 92 1e-18
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 84 3e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 76 5e-14
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 159 bits (401), Expect = 6e-39
Identities = 87/202 (43%), Positives = 107/202 (52%), Gaps = 29/202 (14%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGA--CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTC 175
+EGHMSREC + G+ +GA CF CG +GHMSR+CP C
Sbjct: 50 EEGHMSRECPNEARSGA---AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFE-------C 99
Query: 176 YNCGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEAGHISRNC--SQ 307
Y CG+ GHLS+DC Q S +GG TCYKCG+AGHISR+C Q
Sbjct: 100 YKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQ 159
Query: 308 NG-SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRECPN---- 454
G S CYKC GH+SRDC DR KCY C +SGHMSRECP+
Sbjct: 160 GGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGHMSRECPSAGST 217
Query: 455 GQNEKKCYKCNNPGHLARDCSD 520
G ++ CYKC PGH++R+C +
Sbjct: 218 GSGDRACYKCGKPGHISRECPE 239
Score = 151 bits (381), Expect = 1e-36
Identities = 80/194 (41%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Frame = +2
Query: 8 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV------ 169
GHMSR+C + K G+ + C+ CG GH+SR+CP
Sbjct: 79 GHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYS 137
Query: 170 ---TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNG-SNERQM 331
TCY CG++GH+S+DC S G TCYKCG+AGHISR+C Q G S
Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 196
Query: 332 KCYKCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN---------GQNEKK 472
KCYKC + GHMSR+C G+ DR CY C K GH+SRECP G ++
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYGGSRGGGDRT 254
Query: 473 CYKCNNPGHLARDC 514
CYKC GH++RDC
Sbjct: 255 CYKCGEAGHISRDC 268
Score = 144 bits (362), Expect = 2e-34
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
Frame = +2
Query: 29 TENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSK 208
TE+ K + S +C NCG GH +RECP+ TC+ CGE GH+S+
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPE-------ADSKGDERSTTCFRCGEEGHMSR 56
Query: 209 DCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC-- 376
+C N S G TC++CGEAGH+SR+C S + +CYKC Q GH+SRDC
Sbjct: 57 EC--PNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPS 114
Query: 377 -----------------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCN 487
Q G CY C +GH+SR+CPNGQ ++ CYKC
Sbjct: 115 SQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCG 174
Query: 488 NPGHLARDC 514
+ GH++RDC
Sbjct: 175 DAGHISRDC 183
Score = 48.9 bits (115), Expect = 8e-06
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 365 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE-----KKCYKCNNPGHLARDCSDE 523
+ D + + C NC K GH +RECP ++ C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 142 bits (359), Expect = 4e-34
Identities = 69/180 (38%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 181
+ GH +RECT + C+NC +GH + EC + TCY
Sbjct: 24 ENGHQARECT---------KGSICYNCNQTGHKASECTEPQQEK------------TCYA 62
Query: 182 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNERQMKC 337
CG +GHL +DC + PR G CYKCG GHI+R+C N G + M C
Sbjct: 63 CGTAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNC 118
Query: 338 YKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 517
Y C +GH +RDCT VKCY+C K GH S EC + + CYKCN PGH+A +C+
Sbjct: 119 YACGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 90.5 bits (223), Expect = 3e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +2
Query: 245 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 424
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 425 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 514
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 49.3 bits (116), Expect = 6e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 404 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 520
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 127 bits (320), Expect = 1e-29
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGA--------------CFNCGLSGHMSRECPQXXXXXXX 139
+ GH +REC G RS C+ CG SGH++++C
Sbjct: 11 RTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDK--- 67
Query: 140 XXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSN 319
CYNCG GH++KDC E CY CG+ GH++R+C +
Sbjct: 68 ----------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDCD----H 108
Query: 320 ERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGH 499
+ KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GH
Sbjct: 109 ADEQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGH 161
Query: 500 LARDCSDE 523
LAR+C+ E
Sbjct: 162 LARECTIE 169
Score = 103 bits (257), Expect = 3e-22
Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Frame = +2
Query: 173 CYNCGESGHLSKDCSEQNYRN----SAPRGG---------NTCYKCGEAGHISRNCSQNG 313
C+ CG +GH +++C R S R G + CY+CGE+GH++++C
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL-- 63
Query: 314 SNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNP 493
+ CY C + GH+++DC + +R+ CYNC K GH++R+C + +E+KCY C
Sbjct: 64 --QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKCYSCGEF 120
Query: 494 GHLARDCS 517
GH+ +DC+
Sbjct: 121 GHIQKDCT 128
Score = 85.9 bits (211), Expect = 6e-17
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Frame = +2
Query: 254 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------CYKCNQFGHMSRDCTQ 382
N C+KCG GH +R C R M+ CY+C + GH+++DC
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDL 63
Query: 383 DGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 514
CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 ---QEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 126 bits (316), Expect = 4e-29
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGA--------------------CFNCGLSGHMSRECPQX 121
+ GH +REC G RS C+ CG SGH++++C
Sbjct: 11 RSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQ 70
Query: 122 XXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 301
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 71 EDE-------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDC 112
Query: 302 SQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYK 481
+ + KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+
Sbjct: 113 D----HADEQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYR 161
Query: 482 CNNPGHLARDCSDE 523
C GHLAR+C+ E
Sbjct: 162 CGESGHLARECTIE 175
Score = 89.0 bits (219), Expect = 7e-18
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
Frame = +2
Query: 254 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 364
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 365 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 514
++DC ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 126 bits (316), Expect = 4e-29
Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGA--------------------CFNCGLSGHMSRECPQX 121
+ GH +REC G RS C+ CG SGH++++C
Sbjct: 11 RSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQ 70
Query: 122 XXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 301
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 71 ED--------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDC 111
Query: 302 SQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYK 481
+ + KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+
Sbjct: 112 D----HADEQKCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYR 160
Query: 482 CNNPGHLARDCSDE 523
C GHLAR+C+ E
Sbjct: 161 CGESGHLARECTIE 174
Score = 88.2 bits (217), Expect = 1e-17
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +2
Query: 254 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 364
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 365 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 514
++DC + ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 125 bits (314), Expect = 7e-29
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 181
K GH++ +C + C+NC GH+ +C CYN
Sbjct: 11 KIGHLAEDCDSER---------LCYNCNKPGHVQTDCTMPRTVEFKQ----------CYN 51
Query: 182 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCYKCNQF 355
CGE+GH+ +C+ Q C+ C + GHISR C + R ++ CYKC
Sbjct: 52 CGETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGP 100
Query: 356 GHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 514
HM++DC ++ +KCY C ++GHMSR+C QN++ CY CN GH+++DC
Sbjct: 101 NHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 107 bits (267), Expect = 2e-23
Identities = 54/150 (36%), Positives = 81/150 (54%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 181
K GH+ +CT + Q C+NCG +GH+ EC C+N
Sbjct: 30 KPGHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQR----------------CFN 69
Query: 182 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGH 361
C ++GH+S++C E + ++ +CYKCG H++++C + +KCY C Q GH
Sbjct: 70 CNQTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTCGQAGH 126
Query: 362 MSRDCTQDGNDRQVKCYNCNKSGHMSRECP 451
MSRDC NDR CYNCN++GH+S++CP
Sbjct: 127 MSRDCQ---NDRL--CYNCNETGHISKDCP 151
Score = 103 bits (256), Expect = 4e-22
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +2
Query: 68 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPR 247
AC+ CG GH++ +C CYNC + GH+ DC+ PR
Sbjct: 5 ACYVCGKIGHLAEDCDSERL---------------CYNCNKPGHVQTDCT-------MPR 42
Query: 248 GGN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCY 412
CY CGE GH+ C+ +C+ CNQ GH+SR+C + + V CY
Sbjct: 43 TVEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 413 NCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 523
C HM+++C +G + KCY C GH++RDC ++
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 326 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 499
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 500 LARDCS 517
+ +C+
Sbjct: 58 VRSECT 63
Score = 37.7 bits (86), Expect = 0.020
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 8 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQ 118
GHMSR+C Q C+NC +GH+S++CP+
Sbjct: 125 GHMSRDC---------QNDRLCYNCNETGHISKDCPK 152
Score = 31.2 bits (69), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 461 NEKKCYKCNNPGHLARDCSDE 523
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 112 bits (280), Expect = 6e-25
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Frame = +2
Query: 74 FNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV-------TCYNCGESGHLSKDCSEQNYR 232
F CG SGH +R CP+ TCY CGESG +K+C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLL--- 63
Query: 233 NSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 412
GN CY CG +GHI+++C ++ ER+ CY C + GH++RDC + ++ KCY
Sbjct: 64 ------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQ---KEQKCY 113
Query: 413 NCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 517
+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 114 SCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 95.9 bits (237), Expect = 6e-20
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Frame = +2
Query: 8 GHMSRECTENKKGG-------------SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXX 148
GH +R C GG S S C+ CG SG ++ C
Sbjct: 13 GHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI------ 66
Query: 149 XXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQ 328
CYNCG SGH++KDC + CY CG GH++R+C + +++
Sbjct: 67 --------CYNCGRSGHIAKDCKDPKRERR-----QHCYTCGRLGHLARDCDR----QKE 109
Query: 329 MKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC 448
KCY C + GH+ +DC QVKCY C + GH++ C
Sbjct: 110 QKCYSCGKLGHIQKDCA------QVKCYRCGEIGHVAINC 143
Score = 79.3 bits (194), Expect = 6e-15
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +2
Query: 26 CTENKKGGSN--QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGH 199
C E+ + N C+NCG SGH++++C CY CG GH
Sbjct: 50 CGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQH----------CYTCGRLGH 99
Query: 200 LSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCT 379
L++DC Q + CY CG+ GHI ++C+Q +KCY+C + GH++ +C+
Sbjct: 100 LARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRCGEIGHVAINCS 144
Query: 380 Q 382
+
Sbjct: 145 K 145
Score = 69.7 bits (169), Expect = 5e-12
Identities = 31/102 (30%), Positives = 53/102 (51%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 181
+ GH++++C + K+ +R C+ CG GH++R+C + CY+
Sbjct: 72 RSGHIAKDCKDPKR----ERRQHCYTCGRLGHLARDCDRQKEQK-------------CYS 114
Query: 182 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQ 307
CG+ GH+ KDC++ CY+CGE GH++ NCS+
Sbjct: 115 CGKLGHIQKDCAQVK-----------CYRCGEIGHVAINCSK 145
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +2
Query: 263 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 442
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 443 ECPNGQNEKKCYKCNNPGHLARDCSD 520
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 91.7 bits (226), Expect = 1e-18
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Frame = +2
Query: 56 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 235
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 301
Query: 236 SAPRGGNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSR 370
PR G + G +G N NG + + N G S
Sbjct: 302 -KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSG 360
Query: 371 DCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 523
QD +R C+NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 361 GGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 85.9 bits (211), Expect = 6e-17
Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Frame = +2
Query: 56 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRN 235
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER--- 415
Query: 236 SAPRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGND 394
PR G + G + G N G+NE + MKC+ C GH S +C +
Sbjct: 416 -KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG 474
Query: 395 RQVKCYNCNKSGHMSRECPN 454
C+NC + GH S ECPN
Sbjct: 475 ----CFNCGEQGHRSNECPN 490
Score = 82.4 bits (202), Expect = 7e-16
Identities = 59/228 (25%), Positives = 79/228 (34%), Gaps = 59/228 (25%)
Frame = +2
Query: 8 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX------- 166
GH S +C E KK + C+NC GH SR+CP+
Sbjct: 266 GHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNG 322
Query: 167 ------------VTCYNCGESGHLSKDCSEQNYRNSAPRGG-------NTCYKCGEAGHI 289
N GESG S + + GG N C+ C + GH
Sbjct: 323 GGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHR 382
Query: 290 SRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD----------------GND--------- 394
S +C + CY C Q GH SRDC ++ GND
Sbjct: 383 SNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAE 442
Query: 395 --------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 514
+KC+NC GH S ECP + + C+ C GH + +C
Sbjct: 443 GFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNEC 488
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 347 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 517
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 518 DE 523
+E
Sbjct: 299 EE 300
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = +2
Query: 5 EGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 115
EGH S EC E +G CFNCG GH S ECP
Sbjct: 461 EGHRSAECPEPPRG--------CFNCGEQGHRSNECP 489
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 83.6 bits (205), Expect = 3e-16
Identities = 48/145 (33%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Frame = +2
Query: 47 GSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQN 226
G +R+ CFNC GH S +CP+ CYNC + GH S++C+E+
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPR---------VCYNCQQPGHTSRECTEER 202
Query: 227 YRNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCT 379
PR G T G AG + + G ER MKC+ C GH S +C
Sbjct: 203 ----KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP 258
Query: 380 QDGNDRQVKCYNCNKSGHMSRECPN 454
+ C+NC + GH S ECPN
Sbjct: 259 EPPRG----CFNCGEQGHRSNECPN 279
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +2
Query: 173 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 352
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 353 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 490
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 491 PGHLARDC 514
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +2
Query: 248 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 424
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 425 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 493
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 494 GHLARDCSD 520
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 5e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 386 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 523
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/98 (30%), Positives = 38/98 (38%)
Frame = +2
Query: 8 GHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCG 187
GH SRECTE +K + G G + + + C+NC
Sbjct: 192 GHTSRECTEERKpreGRTGGFGGGAGFGNNGGND---GFGGDGGFGGGEERGPMKCFNCK 248
Query: 188 ESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 301
GH S +C E PRG C+ CGE GH S C
Sbjct: 249 GEGHRSAECPE------PPRG---CFNCGEQGHRSNEC 277
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = +2
Query: 5 EGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 115
EGH S EC E +G CFNCG GH S ECP
Sbjct: 250 EGHRSAECPEPPRG--------CFNCGEQGHRSNECP 278
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 76.3 bits (186), Expect = 5e-14
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Frame = +2
Query: 8 GHMSRECTENKKGG--SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYN 181
G+ E ++N++G +R C NCG GH+S+EC + C N
Sbjct: 549 GNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDK-----------PKVPRFPCRN 597
Query: 182 CGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGH 361
C + GH + DC + PRG C CG GH + +C Q + C C Q GH
Sbjct: 598 CEQLGHFASDCDQPR----VPRG--PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGH 649
Query: 362 MSRDCTQD--GNDRQVKCYNCNKSGHMSRECP 451
++DC + + C C + GH ECP
Sbjct: 650 FAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 71.6 bits (174), Expect = 1e-12
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +2
Query: 173 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 352
C+NCGE GH+SK+C + PR C C + GH + +C Q + C C
Sbjct: 572 CHNCGEEGHISKECD----KPKVPR--FPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGI 623
Query: 353 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNG----QNEKKCYKCNNPGHLARDC 514
GH + DC Q R C NC + GH +++C N + + C +C GH +C
Sbjct: 624 EGHFAVDCDQPKVPRG-PCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 69.3 bits (168), Expect = 6e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 242 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 421
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 422 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 523
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 55.5 bits (132), Expect = 9e-08
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 18/118 (15%)
Frame = +2
Query: 2 KEGHMSRECTENKKGGSNQRS------------------GACFNCGLSGHMSRECPQXXX 127
+EGH+S+EC + K R+ G C NCG+ GH + +C Q
Sbjct: 577 EEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKV 636
Query: 128 XXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 301
C NCG+ GH +KDC + R C +C E GH C
Sbjct: 637 PRGP-----------CRNCGQEGHFAKDCQNERVRMEPT---EPCRRCAEEGHWGYEC 680
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 514
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,212,340
Number of Sequences: 369166
Number of extensions: 1311992
Number of successful extensions: 6959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5672
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)