Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B19
(583 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 169 4e-42
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 157 2e-38
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 140 2e-33
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 139 7e-33
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 139 7e-33
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 136 3e-32
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 112 5e-25
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 92 9e-19
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 84 3e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 77 4e-14
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 169 bits (429), Expect = 4e-42
Identities = 90/206 (43%), Positives = 111/206 (53%), Gaps = 29/206 (14%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGA--CFNCGLSGHMSRECPQXXXXXXXXXXXXXX 177
C+ CG+EGHMSREC + G+ +GA CF CG +GHMSR+CP
Sbjct: 45 CFRCGEEGHMSRECPNEARSGA---AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFE--- 98
Query: 178 XVTCYNCGESGHLSKDCSE----------QNYRNSAPRGG----NTCYKCGEAGHISRNC 315
CY CG+ GHLS+DC Q S +GG TCYKCG+AGHISR+C
Sbjct: 99 ---CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Query: 316 --SQNG-SNERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSRECPN 468
Q G S CYKC GH+SRDC DR KCY C +SGHMSRECP+
Sbjct: 156 PNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--KCYKCGESGHMSRECPS 213
Query: 469 ----GQNEKKCYKCNNPGHLARDCSD 534
G ++ CYKC PGH++R+C +
Sbjct: 214 AGSTGSGDRACYKCGKPGHISRECPE 239
Score = 165 bits (418), Expect = 7e-41
Identities = 89/208 (42%), Positives = 109/208 (52%), Gaps = 33/208 (15%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
C NCGKEGH +REC E G ++RS CF CG GHMSRECP +
Sbjct: 18 CRNCGKEGHYARECPEADSKG-DERSTTCFRCGEEGHMSRECPN------EARSGAAGAM 70
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRG---GNTCYKCGEAGHISRNC--SQNGSN----- 333
TC+ CGE+GH+S+DC NSA G G CYKCG+ GH+SR+C SQ GS
Sbjct: 71 TCFRCGEAGHMSRDCP-----NSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQ 125
Query: 334 -----------ERQMKCYKCNQFGHMSRDCT------QDGNDRQVKCYNCNKSGHMSREC 462
CYKC GH+SRDC DR CY C +GH+SR+C
Sbjct: 126 KRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR--TCYKCGDAGHISRDC 183
Query: 463 PNGQ------NEKKCYKCNNPGHLARDC 528
PNGQ ++KCYKC GH++R+C
Sbjct: 184 PNGQGGYSGAGDRKCYKCGESGHMSREC 211
Score = 162 bits (409), Expect = 7e-40
Identities = 83/201 (41%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
C+ CG+ GHMSR+C + K G+ + C+ CG GH+SR+CP
Sbjct: 72 CFRCGEAGHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRS 130
Query: 184 ----------TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNG 327
TCY CG++GH+S+DC S G TCYKCG+AGHISR+C Q G
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGA-GDRTCYKCGDAGHISRDCPNGQGG 189
Query: 328 -SNERQMKCYKCNQFGHMSRDCTQDGN----DRQVKCYNCNKSGHMSRECPN-------- 468
S KCYKC + GHMSR+C G+ DR CY C K GH+SRECP
Sbjct: 190 YSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA--CYKCGKPGHISRECPEAGGSYGGS 247
Query: 469 -GQNEKKCYKCNNPGHLARDC 528
G ++ CYKC GH++RDC
Sbjct: 248 RGGGDRTCYKCGEAGHISRDC 268
Score = 144 bits (363), Expect = 2e-34
Identities = 72/188 (38%), Positives = 96/188 (51%), Gaps = 27/188 (14%)
Frame = +1
Query: 46 TENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKD 225
TE+ K + S +C NCG GH +RECP+ TC+ CGE GH+S++
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPE------ADSKGDERSTTCFRCGEEGHMSRE 57
Query: 226 CSEQNYRNSAPRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC--- 390
C N S G TC++CGEAGH+SR+C S + +CYKC Q GH+SRDC
Sbjct: 58 C--PNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSS 115
Query: 391 ----------------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCNN 504
Q G CY C +GH+SR+CPNGQ ++ CYKC +
Sbjct: 116 QGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGD 175
Query: 505 PGHLARDC 528
GH++RDC
Sbjct: 176 AGHISRDC 183
Score = 139 bits (349), Expect = 7e-33
Identities = 73/181 (40%), Positives = 99/181 (54%), Gaps = 25/181 (13%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENK---KGGSNQ---RSGA---------CFNCGLSGHMSRECPQ 135
ECY CG+EGH+SR+C ++ +GG Q RSGA C+ CG +GH+SR+CP
Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN 157
Query: 136 XXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC 315
TCY CG++GH+S+DC S G CYKCGE+GH+SR C
Sbjct: 158 GQGGYSGAGDR-----TCYKCGDAGHISRDCPNGQGGYSG-AGDRKCYKCGESGHMSREC 211
Query: 316 SQNGS-NERQMKCYKCNQFGHMSRDC---------TQDGNDRQVKCYNCNKSGHMSRECP 465
GS CYKC + GH+SR+C ++ G DR CY C ++GH+SR+CP
Sbjct: 212 PSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDR--TCYKCGEAGHISRDCP 269
Query: 466 N 468
+
Sbjct: 270 S 270
Score = 48.9 bits (115), Expect = 9e-06
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 379 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE-----KKCYKCNNPGHLARDCSDE 537
+ D + + C NC K GH +RECP ++ C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 157 bits (397), Expect = 2e-38
Identities = 74/184 (40%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
CYNCG+ GH +RECT + C+NC +GH + EC +
Sbjct: 19 CYNCGENGHQARECT---------KGSICYNCNQTGHKASECTEPQQEK----------- 58
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQN--------GSNER 339
TCY CG +GHL +DC + PR G CYKCG GHI+R+C N G +
Sbjct: 59 TCYACGTAGHLVRDCPS----SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRS 114
Query: 340 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLA 519
M CY C +GH +RDCT VKCY+C K GH S EC + + CYKCN PGH+A
Sbjct: 115 NMNCYACGSYGHQARDCTMG-----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIA 169
Query: 520 RDCS 531
+C+
Sbjct: 170 VNCT 173
Score = 90.5 bits (223), Expect = 3e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 259 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 438
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 439 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 528
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 78.2 bits (191), Expect = 1e-14
Identities = 45/131 (34%), Positives = 59/131 (45%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX 180
ECY CG+ GH++R+C N Q+SG F GH S
Sbjct: 84 ECYKCGRVGHIARDCRTN-----GQQSGGRF----GGHRSN------------------- 115
Query: 181 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 360
+ CY CG GH ++DC+ G CY CG+ GH S C Q + CYKC
Sbjct: 116 MNCYACGSYGHQARDCTM----------GVKCYSCGKIGHRSFECQQASDGQ---LCYKC 162
Query: 361 NQFGHMSRDCT 393
NQ GH++ +CT
Sbjct: 163 NQPGHIAVNCT 173
Score = 49.3 bits (116), Expect = 7e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 418 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 534
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 140 bits (353), Expect = 2e-33
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 14/193 (7%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRS--------------GACFNCGLSGHMSRECPQX 138
EC+ CG+ GH +REC G RS C+ CG SGH++++C
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC--- 61
Query: 139 XXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCS 318
CYNCG GH++KDC E CY CG+ GH++R+C
Sbjct: 62 ---------DLQEDKACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGHLARDC- 106
Query: 319 QNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKC 498
+ + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +E CY+C
Sbjct: 107 ---DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTSEVNCYRC 156
Query: 499 NNPGHLARDCSDE 537
GHLAR+C+ E
Sbjct: 157 GESGHLARECTIE 169
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 139 bits (349), Expect = 7e-33
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 120
EC+ CG+ GH +REC G RS C+ CG SGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 121 RECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGH 300
++C CYNCG GH++KDC E CY CG+ GH
Sbjct: 65 KDC------------DLQEDEACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGH 107
Query: 301 ISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE 480
++R+C + + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +E
Sbjct: 108 LARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTSE 156
Query: 481 KKCYKCNNPGHLARDCSDE 537
CY+C GHLAR+C+ E
Sbjct: 157 VNCYRCGESGHLARECTIE 175
Score = 89.0 bits (219), Expect = 8e-18
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 25/112 (22%)
Frame = +1
Query: 268 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 378
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 379 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 528
++DC ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDCDLQEDE---ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 139 bits (349), Expect = 7e-33
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRS--------------------GACFNCGLSGHMS 120
EC+ CG+ GH +REC G RS C+ CG SGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 121 RECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGH 300
++C CYNCG GH++KDC E CY CG+ GH
Sbjct: 65 KDCDLQED-------------ACYNCGRGGHIAKDCKEPKRERE-----QCCYNCGKPGH 106
Query: 301 ISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNE 480
++R+C + + KCY C +FGH+ +DCT +VKCY C ++GH++ C + +E
Sbjct: 107 LARDC----DHADEQKCYSCGEFGHIQKDCT------KVKCYRCGETGHVAINC-SKTSE 155
Query: 481 KKCYKCNNPGHLARDCSDE 537
CY+C GHLAR+C+ E
Sbjct: 156 VNCYRCGESGHLARECTIE 174
Score = 88.2 bits (217), Expect = 1e-17
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 25/112 (22%)
Frame = +1
Query: 268 NTCYKCGEAGHISRNCSQNGSNERQMK-----------------------CYKCNQFGHM 378
N C+KCG +GH +R C G R M+ CY+C + GH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 379 SRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDC 528
++DC + ++ CYNC + GH++++C P + E+ CY C PGHLARDC
Sbjct: 64 AKDC----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 136 bits (343), Expect = 3e-32
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
CY CGK GH++ +C + C+NC GH+ +C
Sbjct: 6 CYVCGKIGHLAEDCDSER---------LCYNCNKPGHVQTDCTMPRTVEFKQ-------- 48
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNER--QMKCYK 357
CYNCGE+GH+ +C+ Q C+ C + GHISR C + R ++ CYK
Sbjct: 49 -CYNCGETGHVRSECTVQR-----------CFNCNQTGHISRECPEPKKTSRFSKVSCYK 96
Query: 358 CNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 528
C HM++DC ++ +KCY C ++GHMSR+C QN++ CY CN GH+++DC
Sbjct: 97 CGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 119 bits (299), Expect = 4e-27
Identities = 58/154 (37%), Positives = 85/154 (55%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
CYNC K GH+ +CT + Q C+NCG +GH+ EC
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQR-------------- 66
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCN 363
C+NC ++GH+S++C E + ++ +CYKCG H++++C + +KCY C
Sbjct: 67 -CFNCNQTGHISRECPEP--KKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG-LKCYTCG 122
Query: 364 QFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECP 465
Q GHMSRDC NDR CYNCN++GH+S++CP
Sbjct: 123 QAGHMSRDCQ---NDRL--CYNCNETGHISKDCP 151
Score = 107 bits (268), Expect = 2e-23
Identities = 52/130 (40%), Positives = 72/130 (55%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX 180
+CYNCG+ GH+ ECT + CFNC +GH+SRECP+
Sbjct: 48 QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPE------PKKTSRFSK 91
Query: 181 VTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKC 360
V+CY CG H++KDC +++ G CY CG+AGH+SR+C N+R CY C
Sbjct: 92 VSCYKCGGPNHMAKDCMKED-----GISGLKCYTCGQAGHMSRDC----QNDR--LCYNC 140
Query: 361 NQFGHMSRDC 390
N+ GH+S+DC
Sbjct: 141 NETGHISKDC 150
Score = 103 bits (257), Expect = 3e-22
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Frame = +1
Query: 85 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 264
AC+ CG GH++ +C CYNC + GH+ DC+ PR
Sbjct: 5 ACYVCGKIGHLAEDCDSERL--------------CYNCNKPGHVQTDCT-------MPRT 43
Query: 265 GN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCYN 429
CY CGE GH+ C+ +C+ CNQ GH+SR+C + + V CY
Sbjct: 44 VEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCYK 96
Query: 430 CNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 537
C HM+++C +G + KCY C GH++RDC ++
Sbjct: 97 CGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 63.5 bits (153), Expect = 4e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 340 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 513
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 514 LARDCS 531
+ +C+
Sbjct: 58 VRSECT 63
Score = 50.1 bits (118), Expect = 4e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQ 135
+CY CG+ GHMSR+C Q C+NC +GH+S++CP+
Sbjct: 117 KCYTCGQAGHMSRDC---------QNDRLCYNCNETGHISKDCPK 152
Score = 31.2 bits (69), Expect = 2.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 475 NEKKCYKCNNPGHLARDCSDE 537
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 112 bits (281), Expect = 5e-25
Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Frame = +1
Query: 7 YNCGKEGHMSRECTEN----KKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXX 174
+ CG GH +R C ++GG + R C + LS
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLS---------------------- 44
Query: 175 XXVTCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCY 354
TCY CGESG +K+C GN CY CG +GHI+++C ++ ER+ CY
Sbjct: 45 --YTCYCCGESGRNAKNCVLL---------GNICYNCGRSGHIAKDC-KDPKRERRQHCY 92
Query: 355 KCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 531
C + GH++RDC + ++ KCY+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 93 TCGRLGHLARDCDRQ---KEQKCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 87.4 bits (215), Expect = 2e-17
Identities = 40/131 (30%), Positives = 63/131 (48%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
CY CG+ G ++ C C+NCG SGH++++C
Sbjct: 47 CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKDPKRERRQH-------- 90
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCN 363
CY CG GHL++DC Q + CY CG+ GHI ++C+Q +KCY+C
Sbjct: 91 -CYTCGRLGHLARDCDRQKEQK--------CYSCGKLGHIQKDCAQ-------VKCYRCG 134
Query: 364 QFGHMSRDCTQ 396
+ GH++ +C++
Sbjct: 135 EIGHVAINCSK 145
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +1
Query: 277 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 456
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 457 ECPNGQNEKKCYKCNNPGHLARDCSD 534
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
Score = 39.3 bits (90), Expect = 0.007
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSREC 129
+CY+CGK GH+ ++C + K C+ CG GH++ C
Sbjct: 111 KCYSCGKLGHIQKDCAQVK----------CYRCGEIGHVAINC 143
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 92.0 bits (227), Expect = 9e-19
Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Frame = +1
Query: 73 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNS 252
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPR--------VCYNCQQPGHNSRDCPEER---- 301
Query: 253 APRGGNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSRD 387
PR G + G +G N NG + + N G S
Sbjct: 302 KpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGG 361
Query: 388 CTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 537
QD +R C+NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 92.0 bits (227), Expect = 9e-19
Identities = 62/235 (26%), Positives = 84/235 (35%), Gaps = 60/235 (25%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXX- 180
C+NC + GH S +C E KK + C+NC GH SR+CP+
Sbjct: 259 CFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSS 315
Query: 181 -------------------VTCYNCGESGHLSKDCSEQNYRNSAPRGG-------NTCYK 282
N GESG S + + GG N C+
Sbjct: 316 GFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFN 375
Query: 283 CGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD----------------GND-- 408
C + GH S +C + CY C Q GH SRDC ++ GND
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGG 435
Query: 409 ---------------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 528
+KC+NC GH S ECP + + C+ C GH + +C
Sbjct: 436 FGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNEC 488
Score = 86.3 bits (212), Expect = 5e-17
Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Frame = +1
Query: 73 QRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNS 252
+R+ CFNC GH S +CP+ CYNC + GH S+DC E+
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPR--------VCYNCQQPGHNSRDCPEER---- 415
Query: 253 APRGGNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGNDR 411
PR G + G + G N G+NE + MKC+ C GH S +C +
Sbjct: 416 KpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG- 474
Query: 412 QVKCYNCNKSGHMSRECPN 468
C+NC + GH S ECPN
Sbjct: 475 ---CFNCGEQGHRSNECPN 490
Score = 68.9 bits (167), Expect = 8e-12
Identities = 39/137 (28%), Positives = 56/137 (40%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
C+NC + GH S +C E KK + C+NC GH SR+CP+
Sbjct: 373 CFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreGRNGF----T 425
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCN 363
+ + G G +E + N+ RG C+ C GH S C E C+ C
Sbjct: 426 SGFGGGNDGGFGGGNAE-GFGNNEERGPMKCFNCKGEGHRSAECP-----EPPRGCFNCG 479
Query: 364 QFGHMSRDCTQDGNDRQ 414
+ GH S +C R+
Sbjct: 480 EQGHRSNECPNPAKpre 496
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 361 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 531
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 532 DE 537
+E
Sbjct: 299 EE 300
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 132
+C+NC EGH S EC E +G CFNCG GH S ECP
Sbjct: 454 KCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 489
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 84.0 bits (206), Expect = 3e-16
Identities = 48/144 (33%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Frame = +1
Query: 64 GSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNY 243
G +R+ CFNC GH S +CP+ CYNC + GH S++C+E+
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPR--------VCYNCQQPGHTSRECTEER- 202
Query: 244 RNSAPRGGNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCTQ 396
PR G T G AG + + G ER MKC+ C GH S +C +
Sbjct: 203 ---KpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Query: 397 DGNDRQVKCYNCNKSGHMSRECPN 468
C+NC + GH S ECPN
Sbjct: 260 PPRG----CFNCGEQGHRSNECPN 279
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +1
Query: 187 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 366
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 367 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 504
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 505 PGHLARDC 528
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 63.5 bits (153), Expect = 4e-10
Identities = 37/137 (27%), Positives = 51/137 (37%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
C+NC + GH S +C E +K + C+NC GH SREC +
Sbjct: 160 CFNCQQPGHRSSDCPEPRK---EREPRVCYNCQQPGHTSRECTEERKpreGRTGGFGGGA 216
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCN 363
N G + D + RG C+ C GH S C E C+ C
Sbjct: 217 GFGNNGGNDGFGGD---GGFGGGEERGPMKCFNCKGEGHRSAECP-----EPPRGCFNCG 268
Query: 364 QFGHMSRDCTQDGNDRQ 414
+ GH S +C R+
Sbjct: 269 EQGHRSNECPNPAKpre 285
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +1
Query: 262 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 438
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 439 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 507
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 508 GHLARDCSD 534
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 6e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 400 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 537
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = +1
Query: 1 ECYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECP 132
+C+NC EGH S EC E +G CFNCG GH S ECP
Sbjct: 243 KCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 278
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 76.6 bits (187), Expect = 4e-14
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 4/151 (2%)
Frame = +1
Query: 25 GHMSRECTENKKGG--SNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXVTCYNC 198
G+ E ++N++G +R C NCG GH+S+EC + C NC
Sbjct: 549 GNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDK----------PKVPRFPCRNC 598
Query: 199 GESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHM 378
+ GH + DC + PRG C CG GH + +C Q + C C Q GH
Sbjct: 599 EQLGHFASDCDQPR----VPRG--PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGHF 650
Query: 379 SRDCTQD--GNDRQVKCYNCNKSGHMSRECP 465
++DC + + C C + GH ECP
Sbjct: 651 AKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 75.5 bits (184), Expect = 9e-14
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Frame = +1
Query: 4 CYNCGKEGHMSRECTENKKGGSNQRSGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXV 183
C+NCG+EGH+S+EC + K C NC GH + +C Q
Sbjct: 572 CHNCGEEGHISKECDKPK-----VPRFPCRNCEQLGHFASDCDQPRVPRG---------- 616
Query: 184 TCYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNC-SQNGSNERQMKCYKC 360
C NCG GH + DC + PRG C CG+ GH +++C ++ E C +C
Sbjct: 617 PCRNCGIEGHFAVDCDQP----KVPRG--PCRNCGQEGHFAKDCQNERVRMEPTEPCRRC 670
Query: 361 NQFGHMSRDCTQDGNDRQ 414
+ GH +C D Q
Sbjct: 671 AEEGHWGYECPTRPKDLQ 688
Score = 69.3 bits (168), Expect = 6e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 256 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 435
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 436 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 537
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 397 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 528
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,250,033
Number of Sequences: 369166
Number of extensions: 1396277
Number of successful extensions: 8958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6563
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)