Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B22
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 144 2e-34
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 124 1e-28
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 124 1e-28
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 124 1e-28
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 124 1e-28
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 121 8e-28
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 112 5e-25
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 89 4e-18
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 79 6e-15
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 72 1e-12
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 144 bits (362), Expect = 2e-34
Identities = 76/177 (42%), Positives = 92/177 (51%), Gaps = 27/177 (15%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSE---------- 159
CF CG +GHMSR+CP CY CG+ GHLS+DC
Sbjct: 72 CFRCGEAGHMSRDCPNSAKPGAAKGFE-------CYKCGQEGHLSRDCPSSQGGSRGGYG 124
Query: 160 QNYRNSAPRGG----NTCYKCGEAGHISRNC--SQNG-SNERQMKCYKCNQFGHMSRDCT 318
Q S +GG TCYKCG+AGHISR+C Q G S CYKC GH+SRDC
Sbjct: 125 QKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCP 184
Query: 319 ------QDGNDRQVKCYNCNKSGHMSRECPN----GQNEKKCYKCNNPGHLARDCSD 459
DR KCY C +SGHMSRECP+ G ++ CYKC PGH++R+C +
Sbjct: 185 NGQGGYSGAGDR--KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPE 239
Score = 140 bits (352), Expect = 2e-33
Identities = 69/178 (38%), Positives = 91/178 (51%), Gaps = 27/178 (15%)
Frame = +1
Query: 1 SGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSA 180
S +C NCG GH +RECP+ TC+ CGE GH+S++C N S
Sbjct: 15 STSCRNCGKEGHYARECPE-------ADSKGDERSTTCFRCGEEGHMSREC--PNEARSG 65
Query: 181 PRGGNTCYKCGEAGHISRNC--SQNGSNERQMKCYKCNQFGHMSRDC------------- 315
G TC++CGEAGH+SR+C S + +CYKC Q GH+SRDC
Sbjct: 66 AAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQ 125
Query: 316 ------TQDGNDRQVKCYNCNKSGHMSRECPNGQ------NEKKCYKCNNPGHLARDC 453
Q G CY C +GH+SR+CPNGQ ++ CYKC + GH++RDC
Sbjct: 126 KRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDC 183
Score = 138 bits (348), Expect = 6e-33
Identities = 72/173 (41%), Positives = 89/173 (51%), Gaps = 25/173 (14%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV---------TCYNCGESGHLSKDCSEQ 162
C+ CG GH+SR+CP TCY CG++GH+S+DC
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Query: 163 NYRNSAPRGGNTCYKCGEAGHISRNC--SQNG-SNERQMKCYKCNQFGHMSRDCTQDGN- 330
S G TCYKCG+AGHISR+C Q G S KCYKC + GHMSR+C G+
Sbjct: 159 QGGYSGA-GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGST 217
Query: 331 ---DRQVKCYNCNKSGHMSRECPN---------GQNEKKCYKCNNPGHLARDC 453
DR CY C K GH+SRECP G ++ CYKC GH++RDC
Sbjct: 218 GSGDRA--CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 112 bits (281), Expect = 4e-25
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C+ CG +GH+SR+CP TCY CG++GH+S+DC S G
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDR------TCYKCGDAGHISRDCPNGQGGYSGA-G 194
Query: 190 GNTCYKCGEAGHISRNCSQNGSN-ERQMKCYKCNQFGHMSRDC---------TQDGNDRQ 339
CYKCGE+GH+SR C GS CYKC + GH+SR+C ++ G DR
Sbjct: 195 DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRT 254
Query: 340 VKCYNCNKSGHMSRECPN 393
CY C ++GH+SR+CP+
Sbjct: 255 --CYKCGEAGHISRDCPS 270
Score = 89.7 bits (221), Expect = 3e-18
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Frame = +1
Query: 160 QNYRNSAPRGGNTCYKCGEAGHISRNCSQNGS--NERQMKCYKCNQFGHMSRDC---TQD 324
++ + +C CG+ GH +R C + S +ER C++C + GHMSR+C +
Sbjct: 5 EDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARS 64
Query: 325 GNDRQVKCYNCNKSGHMSRECPNGQNEK-----KCYKCNNPGHLARDC 453
G + C+ C ++GHMSR+CPN +CYKC GHL+RDC
Sbjct: 65 GAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 53.1 bits (126), Expect = 4e-07
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 7 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDC 153
AC+ CG GH+SRECP+ TCY CGE+GH+S+DC
Sbjct: 223 ACYKCGKPGHISRECPEAGGSYGGSRGGGDR---TCYKCGEAGHISRDC 268
Score = 48.9 bits (115), Expect = 7e-06
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 304 SRDCTQDGNDRQVKCYNCNKSGHMSRECPNG-----QNEKKCYKCNNPGHLARDCSDE 462
+ D + + C NC K GH +RECP + C++C GH++R+C +E
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 124 bits (312), Expect = 1e-28
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 29/183 (15%)
Frame = +1
Query: 1 SGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVT--------------CYNCGESGH 138
S CF CG SGH +RECP + CY CGESGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 139 LSKDCS-EQNYRNSAPRGGNT--------------CYKCGEAGHISRNCSQNGSNERQMK 273
L+KDC +++ + RGG+ CY CG+ GH++R+C + + K
Sbjct: 63 LAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD----HADEQK 118
Query: 274 CYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDC 453
CY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+C
Sbjct: 119 CYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLAREC 171
Query: 454 SDE 462
+ E
Sbjct: 172 TIE 174
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 124 bits (312), Expect = 1e-28
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 28/177 (15%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C+NCG +GH +REC + CYNC ++GH + +C+E P+
Sbjct: 19 CYNCGENGHQARECTKGSI---------------CYNCNQTGHKASECTE-------PQQ 56
Query: 190 GNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGND------------ 333
TCY CG AGH+ R+C + + + +CYKC + GH++RDC +G
Sbjct: 57 EKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNM 116
Query: 334 ----------------RQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 456
VKCY+C K GH S EC + + CYKCN PGH+A +C+
Sbjct: 117 NCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
Score = 90.5 bits (223), Expect = 2e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Frame = +1
Query: 184 RGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 363
R G CY CGE GH +R C++ CY CNQ GH + +CT+ ++ CY C
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI------CYNCNQTGHKASECTEPQQEKT--CYACGT 65
Query: 364 SGHMSRECPNGQNEK---KCYKCNNPGHLARDC 453
+GH+ R+CP+ N + +CYKC GH+ARDC
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 49.3 bits (116), Expect = 5e-06
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 343 KCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSD 459
+CYNC ++GH +REC G CY CN GH A +C++
Sbjct: 18 RCYNCGENGHQARECTKGSI---CYNCNQTGHKASECTE 53
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 124 bits (311), Expect = 1e-28
Identities = 65/184 (35%), Positives = 88/184 (47%), Gaps = 30/184 (16%)
Frame = +1
Query: 1 SGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVT--------------CYNCGESGH 138
S CF CG SGH +RECP + CY CGESGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 139 LSKDCS--EQNYRNSAPRGGNT--------------CYKCGEAGHISRNCSQNGSNERQM 270
L+KDC E + RGG+ CY CG+ GH++R+C + +
Sbjct: 63 LAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD----HADEQ 118
Query: 271 KCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARD 450
KCY C +FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+
Sbjct: 119 KCYSCGEFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLARE 171
Query: 451 CSDE 462
C+ E
Sbjct: 172 CTIE 175
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 124 bits (311), Expect = 1e-28
Identities = 64/178 (35%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Frame = +1
Query: 1 SGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV--------TCYNCGESGHLSKDCS 156
S CF CG +GH +RECP CY CGESGHL+KDC
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCD 62
Query: 157 EQNYRN--SAPRGGNT--------------CYKCGEAGHISRNCSQNGSNERQMKCYKCN 288
Q + + RGG+ CY CG+ GH++R+C + + KCY C
Sbjct: 63 LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD----HADEQKCYSCG 118
Query: 289 QFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCSDE 462
+FGH+ +DCT+ VKCY C ++GH++ C +E CY+C GHLAR+C+ E
Sbjct: 119 EFGHIQKDCTK------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLARECTIE 169
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 121 bits (304), Expect = 8e-28
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C+NC GH+ +C CYNCGE+GH+ +C+ Q
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ----------CYNCGETGHVRSECTVQR-------- 66
Query: 190 GNTCYKCGEAGHISRNCSQNGSNER--QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNK 363
C+ C + GHISR C + R ++ CYKC HM++DC ++ +KCY C +
Sbjct: 67 ---CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQ 123
Query: 364 SGHMSRECPNGQNEKKCYKCNNPGHLARDC 453
+GHMSR+C QN++ CY CN GH+++DC
Sbjct: 124 AGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 103 bits (256), Expect = 3e-22
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 7 ACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPR 186
AC+ CG GH++ +C CYNC + GH+ DC+ PR
Sbjct: 5 ACYVCGKIGHLAEDCDSERL---------------CYNCNKPGHVQTDCT-------MPR 42
Query: 187 GGN--TCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQ---VKCY 351
CY CGE GH+ C+ +C+ CNQ GH+SR+C + + V CY
Sbjct: 43 TVEFKQCYNCGETGHVRSECTVQ-------RCFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 352 NCNKSGHMSREC--PNGQNEKKCYKCNNPGHLARDCSDE 462
C HM+++C +G + KCY C GH++RDC ++
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Score = 102 bits (253), Expect = 7e-22
Identities = 48/127 (37%), Positives = 72/127 (56%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C+NCG +GH+ EC C+NC ++GH+S++C E + ++
Sbjct: 49 CYNCGETGHVRSECTVQR----------------CFNCNQTGHISRECPEP--KKTSRFS 90
Query: 190 GNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSG 369
+CYKCG H++++C + +KCY C Q GHMSRDC NDR CYNCN++G
Sbjct: 91 KVSCYKCGGPNHMAKDCMKEDGISG-LKCYTCGQAGHMSRDCQ---NDRL--CYNCNETG 144
Query: 370 HMSRECP 390
H+S++CP
Sbjct: 145 HISKDCP 151
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 265 QMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSREC--PNGQNEKKCYKCNNPGH 438
Q CY C + GH++ DC D + CYNCNK GH+ +C P K+CY C GH
Sbjct: 3 QKACYVCGKIGHLAEDC-----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 439 LARDCS 456
+ +C+
Sbjct: 58 VRSECT 63
Score = 31.2 bits (69), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 400 NEKKCYKCNNPGHLARDCSDE 462
++K CY C GHLA DC E
Sbjct: 2 SQKACYVCGKIGHLAEDCDSE 22
Score = 29.6 bits (65), Expect = 4.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQ 57
C+NC +GH+S++CP+
Sbjct: 137 CYNCNETGHISKDCPK 152
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 112 bits (280), Expect = 5e-25
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Frame = +1
Query: 13 FNCGLSGHMSRECPQXXXXXXXXXXXXXXXXV-------TCYNCGESGHLSKDCSEQNYR 171
F CG SGH +R CP+ TCY CGESG +K+C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLL--- 63
Query: 172 NSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCY 351
GN CY CG +GHI+++C ++ ER+ CY C + GH++RDC + ++ KCY
Sbjct: 64 ------GNICYNCGRSGHIAKDC-KDPKRERRQHCYTCGRLGHLARDCDRQ---KEQKCY 113
Query: 352 NCNKSGHMSRECPNGQNEKKCYKCNNPGHLARDCS 456
+C K GH+ ++C + KCY+C GH+A +CS
Sbjct: 114 SCGKLGHIQKDCA----QVKCYRCGEIGHVAINCS 144
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/129 (33%), Positives = 62/129 (48%)
Frame = +1
Query: 1 SGACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSA 180
S C+ CG SG ++ C CYNCG SGH++KDC +
Sbjct: 44 SYTCYCCGESGRNAKNCVLLGNI--------------CYNCGRSGHIAKDCKDPKRERR- 88
Query: 181 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 360
CY CG GH++R+C + +++ KCY C + GH+ +DC QVKCY C
Sbjct: 89 ----QHCYTCGRLGHLARDCDR----QKEQKCYSCGKLGHIQKDCA------QVKCYRCG 134
Query: 361 KSGHMSREC 387
+ GH++ C
Sbjct: 135 EIGHVAINC 143
Score = 79.0 bits (193), Expect = 6e-15
Identities = 34/104 (32%), Positives = 54/104 (51%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C+NCG SGH++++C CY CG GHL++DC Q +
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQH----------CYTCGRLGHLARDCDRQKEQK----- 111
Query: 190 GNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQ 321
CY CG+ GHI ++C+Q +KCY+C + GH++ +C++
Sbjct: 112 ---CYSCGKLGHIQKDCAQ-------VKCYRCGEIGHVAINCSK 145
Score = 49.7 bits (117), Expect = 4e-06
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +1
Query: 202 YKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSR 381
+ CG +GH +R C + G+ R+ G R CY C +SG ++
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRG--------GGHGRGSQCGSTTLSYTCYCCGESGRNAK 58
Query: 382 ECPNGQNEKKCYKCNNPGHLARDCSD 459
C N CY C GH+A+DC D
Sbjct: 59 NCVLLGNI--CYNCGRSGHIAKDCKD 82
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 89.4 bits (220), Expect = 4e-18
Identities = 52/169 (30%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
CFNC GH S +CP+ CYNC + GH S+DC E+ PR
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER----Kpre 305
Query: 190 GNTCYKCGEAGHISRN---------------CSQNGSNERQMKCYKCNQFGHMSRDCTQD 324
G + G +G N NG + + N G S QD
Sbjct: 306 GRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQD 365
Query: 325 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 462
+R C+NC + GH S +CP + E++ CY C PGH +RDC +E
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 414
Score = 83.6 bits (205), Expect = 2e-16
Identities = 46/135 (34%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
CFNC GH S +CP+ CYNC + GH S+DC E+ PR
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR---------VCYNCQQPGHNSRDCPEER----Kpre 419
Query: 190 GNTCYKCG-----EAGHISRNCSQNGSNERQ--MKCYKCNQFGHMSRDCTQDGNDRQVKC 348
G + G + G N G+NE + MKC+ C GH S +C + C
Sbjct: 420 GRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG----C 475
Query: 349 YNCNKSGHMSRECPN 393
+NC + GH S ECPN
Sbjct: 476 FNCGEQGHRSNECPN 490
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/207 (25%), Positives = 70/207 (33%), Gaps = 59/207 (28%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXX-------------------VTCYNCGES 132
C+NC GH SR+CP+ N GES
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343
Query: 133 GHLSKDCSEQNYRNSAPRGG-------NTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 291
G S + + GG N C+ C + GH S +C + CY C Q
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 403
Query: 292 FGHMSRDCTQD----------------GND-----------------RQVKCYNCNKSGH 372
GH SRDC ++ GND +KC+NC GH
Sbjct: 404 PGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGH 463
Query: 373 MSRECPNGQNEKKCYKCNNPGHLARDC 453
S ECP + + C+ C GH + +C
Sbjct: 464 RSAECP--EPPRGCFNCGEQGHRSNEC 488
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 286 NQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCS 456
N G S QD +R C+NC + GH S +CP + E++ CY C PGH +RDC
Sbjct: 239 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Query: 457 DE 462
+E
Sbjct: 299 EE 300
Score = 53.9 bits (128), Expect = 2e-07
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 ERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNKSGHMSRECPNGQNEKK 411
ER C+ C Q GH S DC + +R+ + CYNC + GH SR+CP + ++
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpre 305
Score = 50.1 bits (118), Expect = 3e-06
Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 43/132 (32%)
Frame = +1
Query: 193 NTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK--------- 345
N C+ C + GH S +C + CY C Q GH SRDC ++ R+ +
Sbjct: 257 NNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSSG 316
Query: 346 ----------------------------------CYNCNKSGHMSRECPNGQNEKKCYKC 423
N N G G+ C+ C
Sbjct: 317 FGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNC 376
Query: 424 NNPGHLARDCSD 459
PGH + DC +
Sbjct: 377 QQPGHRSNDCPE 388
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 79.0 bits (193), Expect = 6e-15
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
CFNC GH S +CP+ CYNC + GH S++C+E+ PR
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPR---------VCYNCQQPGHTSRECTEER----Kpre 206
Query: 190 GNTCYKCGEAGHISRNCSQ--------NGSNER-QMKCYKCNQFGHMSRDCTQDGNDRQV 342
G T G AG + + G ER MKC+ C GH S +C +
Sbjct: 207 GRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRG--- 263
Query: 343 KCYNCNKSGHMSRECPN 393
C+NC + GH S ECPN
Sbjct: 264 -CFNCGEQGHRSNECPN 279
Score = 73.6 bits (179), Expect = 3e-13
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Frame = +1
Query: 112 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 291
C+NC + GH S DC E + PR CY C + GH SR C++ ER+ + +
Sbjct: 160 CFNCQQPGHRSSDCPEPR-KEREPR---VCYNCQQPGHTSRECTE----ERKpreGRTGG 211
Query: 292 FGHMSRDCTQDGNDR--------------QVKCYNCNKSGHMSRECPNGQNEKKCYKCNN 429
FG + GND +KC+NC GH S ECP + + C+ C
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGE 269
Query: 430 PGHLARDC 453
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 61.2 bits (147), Expect = 1e-09
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Frame = +1
Query: 187 GGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVK-CYNCNK 363
GGN+ + GE GH G ER C+ C Q GH S DC + +R+ + CYNC +
Sbjct: 141 GGNSGF--GEGGH--------GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Query: 364 SGHMSRECP---------------------NGQNE----------------KKCYKCNNP 432
GH SREC NG N+ KC+ C
Sbjct: 191 PGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGE 250
Query: 433 GHLARDCSD 459
GH + +C +
Sbjct: 251 GHRSAECPE 259
Score = 56.2 bits (134), Expect = 4e-08
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 325 GNDRQVKCYNCNKSGHMSRECPNGQNEKK---CYKCNNPGHLARDCSDE 462
G +R C+NC + GH S +CP + E++ CY C PGH +R+C++E
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEE 201
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 71.6 bits (174), Expect = 1e-12
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +1
Query: 112 CYNCGESGHLSKDCSEQNYRNSAPRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQ 291
C+NCGE GH+SK+C + PR C C + GH + +C Q + C C
Sbjct: 572 CHNCGEEGHISKECD----KPKVPR--FPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGI 623
Query: 292 FGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNG----QNEKKCYKCNNPGHLARDC 453
GH + DC Q R C NC + GH +++C N + + C +C GH +C
Sbjct: 624 EGHFAVDCDQPKVPRG-PCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 71.2 bits (173), Expect = 1e-12
Identities = 40/129 (31%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Frame = +1
Query: 10 CFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAPRG 189
C NCG GH+S+EC + C NC + GH + DC + PRG
Sbjct: 572 CHNCGEEGHISKECDK-----------PKVPRFPCRNCEQLGHFASDCDQPR----VPRG 616
Query: 190 GNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQD--GNDRQVKCYNCNK 363
C CG GH + +C Q + C C Q GH ++DC + + C C +
Sbjct: 617 --PCRNCGIEGHFAVDCDQ--PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAE 672
Query: 364 SGHMSRECP 390
GH ECP
Sbjct: 673 EGHWGYECP 681
Score = 69.3 bits (168), Expect = 5e-12
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 181 PRGGNTCYKCGEAGHISRNCSQNGSNERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCN 360
PRG C+ CGE GHIS+ C + + C C Q GH + DC Q R C NC
Sbjct: 569 PRG---CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRG-PCRNCG 622
Query: 361 KSGHMSRECPNGQNEK-KCYKCNNPGHLARDCSDE 462
GH + +C + + C C GH A+DC +E
Sbjct: 623 IEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNE 657
Score = 52.4 bits (124), Expect = 6e-07
Identities = 25/79 (31%), Positives = 32/79 (40%)
Frame = +1
Query: 4 GACFNCGLSGHMSRECPQXXXXXXXXXXXXXXXXVTCYNCGESGHLSKDCSEQNYRNSAP 183
G C NCG+ GH + +C Q C NCG+ GH +KDC + R
Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGP-----------CRNCGQEGHFAKDCQNERVRMEPT 664
Query: 184 RGGNTCYKCGEAGHISRNC 240
C +C E GH C
Sbjct: 665 ---EPCRRCAEEGHWGYEC 680
Score = 47.8 bits (112), Expect = 1e-05
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 259 ERQMKCYKCNQFGHMSRDCTQDGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPG 435
ER C+ C + GH+S++C + R C NC + GH + +C + + C C G
Sbjct: 567 ERPRGCHNCGEEGHISKECDKPKVPR-FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEG 625
Query: 436 HLARDC 453
H A DC
Sbjct: 626 HFAVDC 631
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 322 DGNDRQVKCYNCNKSGHMSRECPNGQNEK-KCYKCNNPGHLARDC 453
DG +R C+NC + GH+S+EC + + C C GH A DC
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDC 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,911,377
Number of Sequences: 369166
Number of extensions: 1180064
Number of successful extensions: 6457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5193
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)