Planarian EST Database

DrC_00170

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00170 ACACTTCAAATGTTTAATTCAAATAAAATATCTAAGACAAGAAAGGTTGTCAGAGATGGA GTATTCAAAGCTGAATTAGATAGGTTTTTTCAAAAAGAATTAGCTGAAGATGGTTATTCC AACGTTGAACTACGTGCTGCTCCAAACAGATATGAAATTATTATAAGTGCTACTAAAACT CAAAATGTCTTGGGTGAAAAAGGTCGTCGTGTTAAGGAACTTACAGCAGTTTTACAAAAA CGATTTGATTTAAATGAAAAAGAAGTTGATATTTTCTGCGAAAAAATGGTTAATAGAGGA CTCAGTGCTGTTGCACAAGCTGAATCCTTACGATATAAATTGTTGGGAGGAGTCGCAGTT CGTAAAGCTTGTTATGGTGTTCTTAGATTTATTCTTGAAAGTGGAGCTAAAGGTGCTGAA GTTATTGTTTCAGGAAAGTTAAGAGGCCAAAGAGCAAAATCAATGAAATTCAGTGATGGA TTGATGATTCACAGTGGGAATCCAGTTATCGAATACATTGATGTGGCTGTGCGTCATGTT GAACTGCGTCAAGGTGTTCTTGGAATTAAAGTCAAGATAATGAAAAGTCATGATGTTACC GGAAAACTTGGACCAAAACGTCCTTTGCCTGATTTTATTAGTATTTTACAACCGAAGCTG GAAGTTCCAATAGTTACTCCACGAAGTGAAAACAAACCTCTAACTAATTAAAACGTCTAA ATAAATATTTGTGGATCTTTTAG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00170
         (743 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23396|RS3_HUMAN  40S ribosomal protein S3                     317   3e-86
sp|P02350|RS3A_XENLA  40S ribosomal protein S3-A (S1A)            315   6e-86
sp|P62909|RS3_RAT  40S ribosomal protein S3 >gi|51703309|sp|...   315   8e-86
sp|P79891|RS3_AMBME  40S ribosomal protein S3                     315   1e-85
sp|Q90YS2|RS3_ICTPU  40S ribosomal protein S3                     313   2e-85
sp|P47835|RS3B_XENLA  40S ribosomal protein S3B (S1B)             313   4e-85
sp|Q06559|RS3_DROME  40S ribosomal protein S3                     299   5e-81
sp|P48153|RS3_MANSE  40S ribosomal protein S3                     298   8e-81
sp|P48152|RS3_CAEEL  40S ribosomal protein S3                     295   1e-79
sp|O60128|RS3_SCHPO  40S ribosomal protein S3                     269   7e-72

>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
          Length = 243

 Score =  317 bits (811), Expect = 3e-86
 Identities = 160/224 (71%), Positives = 186/224 (83%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           +ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQNVLGEKG
Sbjct: 4   QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF   E  V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM   D TGK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
          Length = 246

 Score =  315 bits (808), Expect = 6e-86
 Identities = 159/224 (70%), Positives = 186/224 (83%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           +ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQNVLGEKG
Sbjct: 4   QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF   E  V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM   D +GK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227

>sp|P62909|RS3_RAT 40S ribosomal protein S3
 sp|P62908|RS3_MOUSE 40S ribosomal protein S3
          Length = 243

 Score =  315 bits (807), Expect = 8e-86
 Identities = 159/224 (70%), Positives = 186/224 (83%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           +ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQNVLGEKG
Sbjct: 4   QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF   E  V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM   D +GK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|P79891|RS3_AMBME 40S ribosomal protein S3
          Length = 253

 Score =  315 bits (806), Expect = 1e-85
 Identities = 158/224 (70%), Positives = 187/224 (83%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           +ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQNVLGEKG
Sbjct: 4   QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF   E  V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESG+KG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM + D +GK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQK 227

>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
          Length = 245

 Score =  313 bits (803), Expect = 2e-85
 Identities = 158/224 (70%), Positives = 185/224 (82%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           +ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQNVLGEKG
Sbjct: 4   QISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF      V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM   D +GK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227

>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
          Length = 246

 Score =  313 bits (801), Expect = 4e-85
 Identities = 157/224 (70%), Positives = 186/224 (83%)
 Frame = +1

Query: 25  KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 204
           ++SK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P + EIII AT+TQNVLGEKG
Sbjct: 4   QMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKG 63

Query: 205 RRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVL 384
           RR++ELTAV+QKRF   E  V+++ EK+  RGL A+AQAESLRYKLLGG+AVR+ACYGVL
Sbjct: 64  RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 385 RFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLG 564
           RFI+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+PV  Y+D AVRHV LRQGVLG
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLG 183

Query: 565 IKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           IKVKIM   D +GK+GPK+PLPD +SI++PK E+   TP SE K
Sbjct: 184 IKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227

>sp|Q06559|RS3_DROME 40S ribosomal protein S3
          Length = 246

 Score =  299 bits (766), Expect = 5e-81
 Identities = 147/223 (65%), Positives = 181/223 (81%)
 Frame = +1

Query: 28  ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 207
           ISK RK V DG+FKAEL+ F  +ELAEDGYS VE+R  P+R EIII ATKTQ VLGEKGR
Sbjct: 7   ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66

Query: 208 RVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 387
           R++ELTA++QKRF+     ++++ EK+  RGL A+AQAESLRYKL GG+AVR+ACYGVLR
Sbjct: 67  RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126

Query: 388 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 567
           +I+ESGAKG EV+VSGKLRGQRAKSMKF DGLMIHSG+P  +Y++ A RHV LRQGVLGI
Sbjct: 127 YIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGI 186

Query: 568 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           KVK+M  +D   K+GPK+PLPD +S+++PK E    TP +E K
Sbjct: 187 KVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229

>sp|P48153|RS3_MANSE 40S ribosomal protein S3
          Length = 243

 Score =  298 bits (764), Expect = 8e-81
 Identities = 150/227 (66%), Positives = 183/227 (80%)
 Frame = +1

Query: 22  NKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEK 201
           N ISK RK V DGVFKAEL+ F  +ELAEDGYS VE+R  P R EIII AT+TQ+VLGEK
Sbjct: 4   NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63

Query: 202 GRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGV 381
           GRR++ELT+V+QKRF++ E+ V+++ EK+  RGL A+AQAESLRYKL+GG+AVR+ACYGV
Sbjct: 64  GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123

Query: 382 LRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVL 561
           LRFI+ESGA+G EV+VSGKLRGQRAKSMKF DGLMIHSG+P  +Y++ A RHV LRQGVL
Sbjct: 124 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 183

Query: 562 GIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENKPL 702
           GIKVKIM   D  GK GPK+P PD I + +PK E   + P S+ + L
Sbjct: 184 GIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSL 230

>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
          Length = 247

 Score =  295 bits (754), Expect = 1e-79
 Identities = 147/229 (64%), Positives = 184/229 (80%)
 Frame = +1

Query: 10  MFNSNKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNV 189
           M  +  ++K +K V  G+FKAEL+ F  KELAEDGYS VE+R+ P R E+II AT+TQNV
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 190 LGEKGRRVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKA 369
           LGE+GRR+KELT+V+QKRF   E  V+++ EK+ NRGL AVAQ ESLRYKL+GG+AVR+A
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 370 CYGVLRFILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELR 549
           CYGVLRFI+ESGA+G EVIVSGKLRGQRAK+MKF DGLMIHSG+PV +YI  AVRHV+LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 550 QGVLGIKVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTPRSENK 696
           QGV+GIKVKIM  +D  G+ GP+  LPD + I++P+ EV    P S++K
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229

>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
          Length = 249

 Score =  269 bits (687), Expect = 7e-72
 Identities = 136/218 (62%), Positives = 168/218 (77%)
 Frame = +1

Query: 28  ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 207
           ISK RK V DGVF AEL+ FF +EL+E+GYS  E+R  P+R EIII AT TQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66

Query: 208 RVKELTAVLQKRFDLNEKEVDIFCEKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLR 387
           R++ELTA++QKRF   E  V+++ EK+ NRGL AVAQ ESLRYKLL G+AVR+A YGVLR
Sbjct: 67  RIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLR 126

Query: 388 FILESGAKGAEVIVSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGI 567
           +++E+GAKG EV++SGKLR  RAKSMKF+DG MIHSG P +++ID A RHV LRQGVLG+
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGV 186

Query: 568 KVKIMKSHDVTGKLGPKRPLPDFISILQPKLEVPIVTP 681
           KVKIM     T +   K+ LPD + +L PK E PI  P
Sbjct: 187 KVKIMLPEPKTRQ---KKSLPDIVVVLDPKEEEPITKP 221

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,570,796
Number of Sequences: 369166
Number of extensions: 1346027
Number of successful extensions: 4146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00170

Planaria EST Database

DrC_00170

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail