Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_K05
(725 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 209 8e-54
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 207 2e-53
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 207 2e-53
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 207 2e-53
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 207 2e-53
sp|P79891|RS3_AMBME 40S ribosomal protein S3 207 3e-53
sp|Q06559|RS3_DROME 40S ribosomal protein S3 194 2e-49
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 191 1e-48
sp|P48153|RS3_MANSE 40S ribosomal protein S3 189 8e-48
sp|O60128|RS3_SCHPO 40S ribosomal protein S3 169 7e-42
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 209 bits (531), Expect = 8e-54
Identities = 105/140 (75%), Positives = 120/140 (85%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D TGK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKDEILPTTPISEQK 227
Score = 116 bits (290), Expect = 7e-26
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF E V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEK 90
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 207 bits (528), Expect = 2e-53
Identities = 104/140 (74%), Positives = 120/140 (85%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKDEIVPTTPISEQK 227
Score = 113 bits (283), Expect = 5e-25
Identities = 55/87 (63%), Positives = 69/87 (79%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
++SK RK V DG+FKAEL+ F +ELAEDGYS VE+R P + EIII AT+TQNVLGEKG
Sbjct: 4 QMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF E V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEK 90
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 207 bits (528), Expect = 2e-53
Identities = 104/140 (74%), Positives = 120/140 (85%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKDEIVPTTPISEQK 227
Score = 116 bits (290), Expect = 7e-26
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF E V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEK 90
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 207 bits (528), Expect = 2e-53
Identities = 104/140 (74%), Positives = 120/140 (85%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKEEILPTTPVSEQK 227
Score = 114 bits (285), Expect = 3e-25
Identities = 56/87 (64%), Positives = 68/87 (78%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPRGSVELYAEK 90
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 207 bits (527), Expect = 2e-53
Identities = 104/140 (74%), Positives = 120/140 (85%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESGAKG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKDEILPTTPISEQK 227
Score = 116 bits (290), Expect = 7e-26
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF E V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEK 90
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 207 bits (526), Expect = 3e-53
Identities = 103/140 (73%), Positives = 121/140 (86%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKLLGG+AVR+ACYGVLRFI+ESG+KG EV+VSGKLRGQRA
Sbjct: 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRA 147
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM + D +GK+GPK+PLPD
Sbjct: 148 KSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDH 207
Query: 624 ISILQPKLEVPIVTPRSENK 683
+SI++PK E+ TP SE K
Sbjct: 208 VSIVEPKDEILPTTPISEQK 227
Score = 116 bits (290), Expect = 7e-26
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +2
Query: 11 KISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKG 190
+ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQNVLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 191 RRVKELTAVLQKRFDLNEKEVDIFCEK 271
RR++ELTAV+QKRF E V+++ EK
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEK 90
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 194 bits (494), Expect = 2e-49
Identities = 95/140 (67%), Positives = 116/140 (82%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKL GG+AVR+ACYGVLR+I+ESGAKG EV+VSGKLRGQRA
Sbjct: 90 AEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRA 149
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGIKVK+M +D K+GPK+PLPD
Sbjct: 150 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDN 209
Query: 624 ISILQPKLEVPIVTPRSENK 683
+S+++PK E TP +E K
Sbjct: 210 VSVVEPKEEKIYETPETEYK 229
Score = 113 bits (282), Expect = 6e-25
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +2
Query: 14 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 193
ISK RK V DG+FKAEL+ F +ELAEDGYS VE+R P+R EIII ATKTQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 194 RVKELTAVLQKRFDLNEKEVDIFCEK 271
R++ELTA++QKRF+ ++++ EK
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEK 92
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 191 bits (486), Expect = 1e-48
Identities = 96/140 (68%), Positives = 117/140 (83%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ NRGL AVAQ ESLRYKL+GG+AVR+ACYGVLRFI+ESGA+G EVIVSGKLRGQRA
Sbjct: 90 AEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRA 149
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
K+MKF DGLMIHSG+PV +YI AVRHV+LRQGV+GIKVKIM +D G+ GP+ LPD
Sbjct: 150 KAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDH 209
Query: 624 ISILQPKLEVPIVTPRSENK 683
+ I++P+ EV P S++K
Sbjct: 210 VQIVEPQEEVLPKEPHSQHK 229
Score = 111 bits (277), Expect = 2e-24
Identities = 52/89 (58%), Positives = 69/89 (77%)
Frame = +2
Query: 5 SNKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGE 184
+ ++K +K V G+FKAEL+ F KELAEDGYS VE+R+ P R E+II AT+TQNVLGE
Sbjct: 4 NQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGE 63
Query: 185 KGRRVKELTAVLQKRFDLNEKEVDIFCEK 271
+GRR+KELT+V+QKRF E V+++ EK
Sbjct: 64 RGRRIKELTSVVQKRFGFEEGSVELYAEK 92
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 189 bits (479), Expect = 8e-48
Identities = 95/142 (66%), Positives = 114/142 (80%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ RGL A+AQAESLRYKL+GG+AVR+ACYGVLRFI+ESGA+G EV+VSGKLRGQRA
Sbjct: 89 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 148
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGIKVKIM D GK GPK+P PD
Sbjct: 149 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 208
Query: 624 ISILQPKLEVPIVTPRSENKPL 689
I + +PK E + P S+ + L
Sbjct: 209 ILVTEPKDEPAPLEPTSDIRSL 230
Score = 118 bits (295), Expect = 2e-26
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +2
Query: 8 NKISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEK 187
N ISK RK V DGVFKAEL+ F +ELAEDGYS VE+R P R EIII AT+TQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 188 GRRVKELTAVLQKRFDLNEKEVDIFCEK 271
GRR++ELT+V+QKRF++ E+ V+++ EK
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEK 91
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3
Length = 249
Score = 169 bits (428), Expect = 7e-42
Identities = 85/135 (62%), Positives = 104/135 (77%)
Frame = +3
Query: 264 AKKMVNRGLSAVAQAESLRYKLLGGVAVRKACYGVLRFILESGAKGAEVIVSGKLRGQRA 443
A+K+ NRGL AVAQ ESLRYKLL G+AVR+A YGVLR+++E+GAKG EV++SGKLR RA
Sbjct: 90 AEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARA 149
Query: 444 KSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGKLGPKRPLPDF 623
KSMKF+DG MIHSG P +++ID A RHV LRQGVLG+KVKIM T + K+ LPD
Sbjct: 150 KSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLPEPKTRQ---KKSLPDI 206
Query: 624 ISILQPKLEVPIVTP 668
+ +L PK E PI P
Sbjct: 207 VVVLDPKEEEPITKP 221
Score = 108 bits (269), Expect = 2e-23
Identities = 53/86 (61%), Positives = 67/86 (77%)
Frame = +2
Query: 14 ISKTRKVVRDGVFKAELDRFFQKELAEDGYSNVELRAAPNRYEIIISATKTQNVLGEKGR 193
ISK RK V DGVF AEL+ FF +EL+E+GYS E+R P+R EIII AT TQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGR 66
Query: 194 RVKELTAVLQKRFDLNEKEVDIFCEK 271
R++ELTA++QKRF E V+++ EK
Sbjct: 67 RIRELTALVQKRFKFAENTVELYAEK 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,117,887
Number of Sequences: 369166
Number of extensions: 1301036
Number of successful extensions: 3951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3916
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)