Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N08
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 130 9e-31
sp|P79891|RS3_AMBME 40S ribosomal protein S3 129 2e-30
sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B) 129 2e-30
sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A) 129 2e-30
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 129 2e-30
sp|P62909|RS3_RAT 40S ribosomal protein S3 >gi|51703309|sp|... 129 3e-30
sp|Q06559|RS3_DROME 40S ribosomal protein S3 120 1e-27
sp|P48152|RS3_CAEEL 40S ribosomal protein S3 115 4e-26
sp|P48153|RS3_MANSE 40S ribosomal protein S3 112 3e-25
sp|P05750|RS3_YEAST 40S ribosomal protein S3 (YS3) (RP13) 100 2e-21
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3
Length = 243
Score = 130 bits (327), Expect = 9e-31
Identities = 66/90 (73%), Positives = 74/90 (82%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D TGK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P79891|RS3_AMBME 40S ribosomal protein S3
Length = 253
Score = 129 bits (325), Expect = 2e-30
Identities = 65/90 (72%), Positives = 75/90 (83%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM + D +GK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|P47835|RS3B_XENLA 40S ribosomal protein S3B (S1B)
Length = 246
Score = 129 bits (324), Expect = 2e-30
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|P02350|RS3A_XENLA 40S ribosomal protein S3-A (S1A)
Length = 246
Score = 129 bits (324), Expect = 2e-30
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKDEIVPTTPISEQK 227
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3
Length = 245
Score = 129 bits (324), Expect = 2e-30
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKEEILPTTPVSEQK 227
>sp|P62909|RS3_RAT 40S ribosomal protein S3
sp|P62908|RS3_MOUSE 40S ribosomal protein S3
Length = 243
Score = 129 bits (323), Expect = 3e-30
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+PV Y+D AVRHV LRQGVLGIKVKIM D +GK
Sbjct: 138 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGK 197
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +SI++PK E+ TP SE K
Sbjct: 198 IGPKKPLPDHVSIVEPKDEILPTTPISEQK 227
>sp|Q06559|RS3_DROME 40S ribosomal protein S3
Length = 246
Score = 120 bits (300), Expect = 1e-27
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGIKVK+M +D K
Sbjct: 140 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNK 199
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
+GPK+PLPD +S+++PK E TP +E K
Sbjct: 200 IGPKKPLPDNVSVVEPKEEKIYETPETEYK 229
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3
Length = 247
Score = 115 bits (287), Expect = 4e-26
Identities = 57/90 (63%), Positives = 71/90 (78%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAK+MKF DGLMIHSG+PV +YI AVRHV+LRQGV+GIKVKIM +D G+
Sbjct: 140 VSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQ 199
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENK 270
GP+ LPD + I++P+ EV P S++K
Sbjct: 200 NGPRNALPDHVQIVEPQEEVLPKEPHSQHK 229
>sp|P48153|RS3_MANSE 40S ribosomal protein S3
Length = 243
Score = 112 bits (280), Expect = 3e-25
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLRGQRAKSMKF DGLMIHSG+P +Y++ A RHV LRQGVLGIKVKIM D GK
Sbjct: 139 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 198
Query: 181 LGPKRPLPDFISILQPKLEVPIVTPRSENKPL 276
GPK+P PD I + +PK E + P S+ + L
Sbjct: 199 NGPKKPQPDHILVTEPKDEPAPLEPTSDIRSL 230
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 (YS3) (RP13)
Length = 240
Score = 99.8 bits (247), Expect = 2e-21
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = +1
Query: 1 VSGKLRGQRAKSMKFSDGLMIHSGNPVIEYIDVAVRHVELRQGVLGIKVKIMKSHDVTGK 180
VSGKLR RAK+MKF+DG +IHSG PV ++ID A RHV +RQGVLGIKVKIM+ +
Sbjct: 138 VSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSR 196
Query: 181 LGPKRPLPDFISILQPKLEVPIVTP 255
GPK LPD ++I++PK E PI+ P
Sbjct: 197 TGPK-ALPDAVTIIEPKEEEPILAP 220
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,316,148
Number of Sequences: 369166
Number of extensions: 614023
Number of successful extensions: 1678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)